miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12585 5' -53.8 NC_003345.1 + 323 0.68 0.765344
Target:  5'- aGGggGCGGGgggagagacGGCCCGCg-CGggGCa- -3'
miRNA:   3'- -CCuuCGUUU---------CCGGGCGgaGCuuUGgg -5'
12585 5' -53.8 NC_003345.1 + 2452 0.68 0.785044
Target:  5'- uGGcAAGUAAAGG-CCGCCaaGAGGCUa -3'
miRNA:   3'- -CC-UUCGUUUCCgGGCGGagCUUUGGg -5'
12585 5' -53.8 NC_003345.1 + 2515 1.14 0.000996
Target:  5'- aGGAAGCAAAGGCCCGCCUCGAAACCCu -3'
miRNA:   3'- -CCUUCGUUUCCGGGCGGAGCUUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 5522 0.67 0.848649
Target:  5'- cGGAGCGGGGGUaucCCUCGguAUCCa -3'
miRNA:   3'- cCUUCGUUUCCGggcGGAGCuuUGGG- -5'
12585 5' -53.8 NC_003345.1 + 6089 0.68 0.778214
Target:  5'- uGGAAGCGgcuucggAAGGCUCGCUggaugaaucggugguUCGAGauguAUCCg -3'
miRNA:   3'- -CCUUCGU-------UUCCGGGCGG---------------AGCUU----UGGG- -5'
12585 5' -53.8 NC_003345.1 + 9197 0.68 0.775266
Target:  5'- aGGAGCAGAGGagauucggacaCCgGCCUUc-GACCCg -3'
miRNA:   3'- cCUUCGUUUCC-----------GGgCGGAGcuUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 13693 0.7 0.675708
Target:  5'- aGGAGCAaucGAgaacgacgaaaacacGGUCUGUCUCGGAACCUa -3'
miRNA:   3'- cCUUCGU---UU---------------CCGGGCGGAGCUUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 14232 0.67 0.822526
Target:  5'- cGGAGGCAGAa--CCGCCUCuuGACUUc -3'
miRNA:   3'- -CCUUCGUUUccgGGCGGAGcuUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 15066 0.72 0.542703
Target:  5'- cGGAGCGAA-GCCCGCCgCGAcuGCCg -3'
miRNA:   3'- cCUUCGUUUcCGGGCGGaGCUu-UGGg -5'
12585 5' -53.8 NC_003345.1 + 19801 0.69 0.743068
Target:  5'- gGGAAGCGAccGGCggaaucgaaccaCGCCUUGAcccuACCCa -3'
miRNA:   3'- -CCUUCGUUu-CCGg-----------GCGGAGCUu---UGGG- -5'
12585 5' -53.8 NC_003345.1 + 22865 0.68 0.79467
Target:  5'- -cGAGCGGcAGGCCCGgCaggaagCGGGACUCg -3'
miRNA:   3'- ccUUCGUU-UCCGGGCgGa-----GCUUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 23571 0.67 0.831439
Target:  5'- -aGGGCGAcGGCCUG-UUCGuGACCCa -3'
miRNA:   3'- ccUUCGUUuCCGGGCgGAGCuUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 30630 0.69 0.745116
Target:  5'- uGGAGGCGucccguGGCCCGUgUgGGAguACCg -3'
miRNA:   3'- -CCUUCGUuu----CCGGGCGgAgCUU--UGGg -5'
12585 5' -53.8 NC_003345.1 + 30668 0.68 0.755291
Target:  5'- gGGAAcGCGGucGGGCUugaCGCCcuUCGGAACCa -3'
miRNA:   3'- -CCUU-CGUU--UCCGG---GCGG--AGCUUUGGg -5'
12585 5' -53.8 NC_003345.1 + 30697 0.66 0.880387
Target:  5'- -uGAGCcGGGaGUCCGaCUCGGAACCg -3'
miRNA:   3'- ccUUCGuUUC-CGGGCgGAGCUUUGGg -5'
12585 5' -53.8 NC_003345.1 + 30956 0.68 0.784073
Target:  5'- -cGAGCgGAAGGCCCGUccucccuCUCGGGACg- -3'
miRNA:   3'- ccUUCG-UUUCCGGGCG-------GAGCUUUGgg -5'
12585 5' -53.8 NC_003345.1 + 32543 0.68 0.785044
Target:  5'- gGGAAGCGuuccccAAGGCCgUGaCCgUCGAggucgaugaAGCCCa -3'
miRNA:   3'- -CCUUCGU------UUCCGG-GC-GG-AGCU---------UUGGG- -5'
12585 5' -53.8 NC_003345.1 + 33046 0.7 0.671415
Target:  5'- cGGAAGCuccacaccGAGGGCUaCGCCgggcCGAccgccAACCCg -3'
miRNA:   3'- -CCUUCG--------UUUCCGG-GCGGa---GCU-----UUGGG- -5'
12585 5' -53.8 NC_003345.1 + 43604 0.74 0.441959
Target:  5'- cGGAcuacGGCGAGGGgauacgucguguCCUGCUUCGAGACUCc -3'
miRNA:   3'- -CCU----UCGUUUCC------------GGGCGGAGCUUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 45966 0.72 0.553243
Target:  5'- gGGAAGcCAccGGCCCaauCCUCGGggucaAGCCCc -3'
miRNA:   3'- -CCUUC-GUuuCCGGGc--GGAGCU-----UUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.