miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12585 5' -53.8 NC_003345.1 + 2515 1.14 0.000996
Target:  5'- aGGAAGCAAAGGCCCGCCUCGAAACCCu -3'
miRNA:   3'- -CCUUCGUUUCCGGGCGGAGCUUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 70976 0.74 0.432459
Target:  5'- cGAAGCGAuggaacccGGCCCGCC-CGAAGaCCg -3'
miRNA:   3'- cCUUCGUUu-------CCGGGCGGaGCUUUgGG- -5'
12585 5' -53.8 NC_003345.1 + 43604 0.74 0.441959
Target:  5'- cGGAcuacGGCGAGGGgauacgucguguCCUGCUUCGAGACUCc -3'
miRNA:   3'- -CCU----UCGUUUCC------------GGGCGGAGCUUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 71961 0.73 0.471146
Target:  5'- -cAGGCGAAGcaaCCGCCUCGAuGCCUg -3'
miRNA:   3'- ccUUCGUUUCcg-GGCGGAGCUuUGGG- -5'
12585 5' -53.8 NC_003345.1 + 73608 0.73 0.511513
Target:  5'- -cGAGCAugAAGGCCCGCgUCGguAUCUc -3'
miRNA:   3'- ccUUCGU--UUCCGGGCGgAGCuuUGGG- -5'
12585 5' -53.8 NC_003345.1 + 15066 0.72 0.542703
Target:  5'- cGGAGCGAA-GCCCGCCgCGAcuGCCg -3'
miRNA:   3'- cCUUCGUUUcCGGGCGGaGCUu-UGGg -5'
12585 5' -53.8 NC_003345.1 + 45966 0.72 0.553243
Target:  5'- gGGAAGcCAccGGCCCaauCCUCGGggucaAGCCCc -3'
miRNA:   3'- -CCUUC-GUuuCCGGGc--GGAGCU-----UUGGG- -5'
12585 5' -53.8 NC_003345.1 + 68412 0.71 0.628281
Target:  5'- cGGcGGCGAgcGGGUUCGUCaUCGAGACaCCg -3'
miRNA:   3'- -CCuUCGUU--UCCGGGCGG-AGCUUUG-GG- -5'
12585 5' -53.8 NC_003345.1 + 65332 0.7 0.64988
Target:  5'- uGGuAGCGGugacAGGCUCGaCCUCG-AAUCCa -3'
miRNA:   3'- -CCuUCGUU----UCCGGGC-GGAGCuUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 59439 0.7 0.66066
Target:  5'- uGAAGCcgAAAGGCCCGCC----GACCa -3'
miRNA:   3'- cCUUCG--UUUCCGGGCGGagcuUUGGg -5'
12585 5' -53.8 NC_003345.1 + 33046 0.7 0.671415
Target:  5'- cGGAAGCuccacaccGAGGGCUaCGCCgggcCGAccgccAACCCg -3'
miRNA:   3'- -CCUUCG--------UUUCCGG-GCGGa---GCU-----UUGGG- -5'
12585 5' -53.8 NC_003345.1 + 13693 0.7 0.675708
Target:  5'- aGGAGCAaucGAgaacgacgaaaacacGGUCUGUCUCGGAACCUa -3'
miRNA:   3'- cCUUCGU---UU---------------CCGGGCGGAGCUUUGGG- -5'
12585 5' -53.8 NC_003345.1 + 73593 0.69 0.703426
Target:  5'- uGGGAGUAucGuaCCGCCU-GAGGCCg -3'
miRNA:   3'- -CCUUCGUuuCcgGGCGGAgCUUUGGg -5'
12585 5' -53.8 NC_003345.1 + 19801 0.69 0.743068
Target:  5'- gGGAAGCGAccGGCggaaucgaaccaCGCCUUGAcccuACCCa -3'
miRNA:   3'- -CCUUCGUUu-CCGg-----------GCGGAGCUu---UGGG- -5'
12585 5' -53.8 NC_003345.1 + 30630 0.69 0.745116
Target:  5'- uGGAGGCGucccguGGCCCGUgUgGGAguACCg -3'
miRNA:   3'- -CCUUCGUuu----CCGGGCGgAgCUU--UGGg -5'
12585 5' -53.8 NC_003345.1 + 30668 0.68 0.755291
Target:  5'- gGGAAcGCGGucGGGCUugaCGCCcuUCGGAACCa -3'
miRNA:   3'- -CCUU-CGUU--UCCGG---GCGG--AGCUUUGGg -5'
12585 5' -53.8 NC_003345.1 + 77610 0.68 0.765344
Target:  5'- aGGggGCGGGgggagagacGGCCCGCg-CGggGCa- -3'
miRNA:   3'- -CCuuCGUUU---------CCGGGCGgaGCuuUGgg -5'
12585 5' -53.8 NC_003345.1 + 323 0.68 0.765344
Target:  5'- aGGggGCGGGgggagagacGGCCCGCg-CGggGCa- -3'
miRNA:   3'- -CCuuCGUUU---------CCGGGCGgaGCuuUGgg -5'
12585 5' -53.8 NC_003345.1 + 47127 0.68 0.765344
Target:  5'- uGAAGCucaccGGGCCggaCGCCUCGccACCa -3'
miRNA:   3'- cCUUCGuu---UCCGG---GCGGAGCuuUGGg -5'
12585 5' -53.8 NC_003345.1 + 56535 0.68 0.772303
Target:  5'- aGAGGUcAGGGCcucgauagccgaaaCCGCCUCcGAAUCCg -3'
miRNA:   3'- cCUUCGuUUCCG--------------GGCGGAGcUUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.