Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12585 | 5' | -53.8 | NC_003345.1 | + | 77610 | 0.68 | 0.765344 |
Target: 5'- aGGggGCGGGgggagagacGGCCCGCg-CGggGCa- -3' miRNA: 3'- -CCuuCGUUU---------CCGGGCGgaGCuuUGgg -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 73608 | 0.73 | 0.511513 |
Target: 5'- -cGAGCAugAAGGCCCGCgUCGguAUCUc -3' miRNA: 3'- ccUUCGU--UUCCGGGCGgAGCuuUGGG- -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 73593 | 0.69 | 0.703426 |
Target: 5'- uGGGAGUAucGuaCCGCCU-GAGGCCg -3' miRNA: 3'- -CCUUCGUuuCcgGGCGGAgCUUUGGg -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 71961 | 0.73 | 0.471146 |
Target: 5'- -cAGGCGAAGcaaCCGCCUCGAuGCCUg -3' miRNA: 3'- ccUUCGUUUCcg-GGCGGAGCUuUGGG- -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 71853 | 0.68 | 0.793714 |
Target: 5'- uGAAGCAggcaucGAGGCgguugcuUCGCCugUCGAAccGCCCa -3' miRNA: 3'- cCUUCGU------UUCCG-------GGCGG--AGCUU--UGGG- -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 70976 | 0.74 | 0.432459 |
Target: 5'- cGAAGCGAuggaacccGGCCCGCC-CGAAGaCCg -3' miRNA: 3'- cCUUCGUUu-------CCGGGCGGaGCUUUgGG- -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 70673 | 0.67 | 0.840149 |
Target: 5'- -uGGGuCGGAGcGCCCGUgUUGAAcACCCg -3' miRNA: 3'- ccUUC-GUUUC-CGGGCGgAGCUU-UGGG- -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 69321 | 0.68 | 0.804132 |
Target: 5'- cGAGGCuGAGcGCCCGUUcCGcGACCUg -3' miRNA: 3'- cCUUCGuUUC-CGGGCGGaGCuUUGGG- -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 68412 | 0.71 | 0.628281 |
Target: 5'- cGGcGGCGAgcGGGUUCGUCaUCGAGACaCCg -3' miRNA: 3'- -CCuUCGUU--UCCGGGCGG-AGCUUUG-GG- -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 65332 | 0.7 | 0.64988 |
Target: 5'- uGGuAGCGGugacAGGCUCGaCCUCG-AAUCCa -3' miRNA: 3'- -CCuUCGUU----UCCGGGC-GGAGCuUUGGG- -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 62742 | 0.66 | 0.887721 |
Target: 5'- uGAAGC--GGGUauCCGCUUCGGAuucACUCg -3' miRNA: 3'- cCUUCGuuUCCG--GGCGGAGCUU---UGGG- -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 61624 | 0.66 | 0.872806 |
Target: 5'- aGGAAGCGAAGGaaCGCaUCGAGGa-- -3' miRNA: 3'- -CCUUCGUUUCCggGCGgAGCUUUggg -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 59502 | 0.67 | 0.813421 |
Target: 5'- cGAAGCGAGuccGGCCauCGCgCUCGAAccaguaauCCCg -3' miRNA: 3'- cCUUCGUUU---CCGG--GCG-GAGCUUu-------GGG- -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 59439 | 0.7 | 0.66066 |
Target: 5'- uGAAGCcgAAAGGCCCGCC----GACCa -3' miRNA: 3'- cCUUCG--UUUCCGGGCGGagcuUUGGg -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 59105 | 0.66 | 0.85693 |
Target: 5'- cGAAGUAAAucGGCCUGCUcuuuUCGAGuucGCgCCg -3' miRNA: 3'- cCUUCGUUU--CCGGGCGG----AGCUU---UG-GG- -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 56646 | 0.68 | 0.785044 |
Target: 5'- cGGAGGCGGuuucGGCUa---UCGAGGCCCu -3' miRNA: 3'- -CCUUCGUUu---CCGGgcggAGCUUUGGG- -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 56535 | 0.68 | 0.772303 |
Target: 5'- aGAGGUcAGGGCcucgauagccgaaaCCGCCUCcGAAUCCg -3' miRNA: 3'- cCUUCGuUUCCG--------------GGCGGAGcUUUGGG- -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 54332 | 0.67 | 0.831439 |
Target: 5'- aGAcAGCcugcGGCCCGCuCUCGggGCg- -3' miRNA: 3'- cCU-UCGuuu-CCGGGCG-GAGCuuUGgg -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 51482 | 0.68 | 0.804132 |
Target: 5'- -cAAGCGuAGuGCCCGUCUCGucuUCCa -3' miRNA: 3'- ccUUCGUuUC-CGGGCGGAGCuuuGGG- -5' |
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12585 | 5' | -53.8 | NC_003345.1 | + | 47127 | 0.68 | 0.765344 |
Target: 5'- uGAAGCucaccGGGCCggaCGCCUCGccACCa -3' miRNA: 3'- cCUUCGuu---UCCGG---GCGGAGCuuUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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