Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12592 | 3' | -56.2 | NC_003345.1 | + | 307 | 0.69 | 0.619977 |
Target: 5'- gACGGCCCGcGC-GggGCaggggcaggggCCGAcCGGCCCg -3' miRNA: 3'- -UGUUGGGC-UGaCuuCG-----------GGCU-GCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 1030 | 0.74 | 0.319786 |
Target: 5'- cAUAACCUGAaaGcGGCCCGAacCGGCCCu -3' miRNA: 3'- -UGUUGGGCUgaCuUCGGGCU--GCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 3512 | 0.74 | 0.327394 |
Target: 5'- uCGACCCGAaggacGAAGCCauaguGACGACCUa -3' miRNA: 3'- uGUUGGGCUga---CUUCGGg----CUGCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 7079 | 0.69 | 0.598852 |
Target: 5'- gAUAGCCCGACcGAAGaaCGACu-CCCg -3' miRNA: 3'- -UGUUGGGCUGaCUUCggGCUGcuGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 8052 | 1.12 | 0.00089 |
Target: 5'- aACAACCCGACUGAAGCCCGACGACCCg -3' miRNA: 3'- -UGUUGGGCUGACUUCGGGCUGCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 8111 | 0.67 | 0.724739 |
Target: 5'- cCGAcCCCGACgacccGAAGCCucuccaCGACGACUUc -3' miRNA: 3'- uGUU-GGGCUGa----CUUCGG------GCUGCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 8196 | 0.71 | 0.486055 |
Target: 5'- uCGuCCCGACUucGAGGCUUccaacgaaGACGACCCg -3' miRNA: 3'- uGUuGGGCUGA--CUUCGGG--------CUGCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 8531 | 0.66 | 0.774539 |
Target: 5'- -uGACUCaGAUgugGAAGUCCcaacacggcGACGACCCg -3' miRNA: 3'- ugUUGGG-CUGa--CUUCGGG---------CUGCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 8874 | 0.7 | 0.515985 |
Target: 5'- aGCGGCCCGAUU--AGCUCGGCcACCUc -3' miRNA: 3'- -UGUUGGGCUGAcuUCGGGCUGcUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 9226 | 0.68 | 0.64114 |
Target: 5'- uCGACCCG-CcGGAGuuaCCCGACGAgauuCCCg -3' miRNA: 3'- uGUUGGGCuGaCUUC---GGGCUGCU----GGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 12226 | 0.7 | 0.536346 |
Target: 5'- aACGACCCGACgccuGaCCUGAcCGACCa -3' miRNA: 3'- -UGUUGGGCUGacuuC-GGGCU-GCUGGg -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 12924 | 0.67 | 0.73491 |
Target: 5'- uCAGCCCGAUUGGuuaCUGcCGACUCa -3' miRNA: 3'- uGUUGGGCUGACUucgGGCuGCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 13965 | 0.66 | 0.801946 |
Target: 5'- cCGAgUgGACUucauucuggugguGAAGCCCGAgGACUCu -3' miRNA: 3'- uGUUgGgCUGA-------------CUUCGGGCUgCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 14524 | 0.79 | 0.180314 |
Target: 5'- cACGACCaCGAgUGGAGgCCGuGCGACCCc -3' miRNA: 3'- -UGUUGG-GCUgACUUCgGGC-UGCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 15076 | 0.69 | 0.618919 |
Target: 5'- --cGCCCGugUucggagcGAAGCCCGccGCGACUg -3' miRNA: 3'- uguUGGGCugA-------CUUCGGGC--UGCUGGg -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 17498 | 0.67 | 0.714482 |
Target: 5'- aACAGCCCGAacacggcaguCUGAGGgUCGcuACGACUg -3' miRNA: 3'- -UGUUGGGCU----------GACUUCgGGC--UGCUGGg -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 20021 | 0.7 | 0.546631 |
Target: 5'- -gAACCCGGCUGAcuuggAGUUCGACcucCCCg -3' miRNA: 3'- ugUUGGGCUGACU-----UCGGGCUGcu-GGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 21214 | 0.66 | 0.754956 |
Target: 5'- aGCGuCCaCGAUgagGGAcuGCCCGuaggACGACCCg -3' miRNA: 3'- -UGUuGG-GCUGa--CUU--CGGGC----UGCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 21275 | 0.69 | 0.598852 |
Target: 5'- --cAUCCGACUcGucGCCgGGCGACCg -3' miRNA: 3'- uguUGGGCUGA-CuuCGGgCUGCUGGg -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 23881 | 0.71 | 0.505922 |
Target: 5'- ---uCCCGACgUGggGCCgGACGcUCCa -3' miRNA: 3'- uguuGGGCUG-ACuuCGGgCUGCuGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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