miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12592 3' -56.2 NC_003345.1 + 8531 0.66 0.774539
Target:  5'- -uGACUCaGAUgugGAAGUCCcaacacggcGACGACCCg -3'
miRNA:   3'- ugUUGGG-CUGa--CUUCGGG---------CUGCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 7079 0.69 0.598852
Target:  5'- gAUAGCCCGACcGAAGaaCGACu-CCCg -3'
miRNA:   3'- -UGUUGGGCUGaCUUCggGCUGcuGGG- -5'
12592 3' -56.2 NC_003345.1 + 38808 0.69 0.609406
Target:  5'- ----aCCGGCUGAAGCCCG-UGAUUa -3'
miRNA:   3'- uguugGGCUGACUUCGGGCuGCUGGg -5'
12592 3' -56.2 NC_003345.1 + 53338 0.69 0.609406
Target:  5'- uCGACCCGAUguUGAuguuGCUCGugGAUUCc -3'
miRNA:   3'- uGUUGGGCUG--ACUu---CGGGCugCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 9226 0.68 0.64114
Target:  5'- uCGACCCG-CcGGAGuuaCCCGACGAgauuCCCg -3'
miRNA:   3'- uGUUGGGCuGaCUUC---GGGCUGCU----GGG- -5'
12592 3' -56.2 NC_003345.1 + 42002 0.68 0.64114
Target:  5'- aGCgAACCCGAC-GAAacGCCCGACucgugggaACCCu -3'
miRNA:   3'- -UG-UUGGGCUGaCUU--CGGGCUGc-------UGGG- -5'
12592 3' -56.2 NC_003345.1 + 8111 0.67 0.724739
Target:  5'- cCGAcCCCGACgacccGAAGCCucuccaCGACGACUUc -3'
miRNA:   3'- uGUU-GGGCUGa----CUUCGG------GCUGCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 12924 0.67 0.73491
Target:  5'- uCAGCCCGAUUGGuuaCUGcCGACUCa -3'
miRNA:   3'- uGUUGGGCUGACUucgGGCuGCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 38670 0.67 0.744986
Target:  5'- uCGACgCCGAC-GAAGCCCGcaagcggauguACGACa- -3'
miRNA:   3'- uGUUG-GGCUGaCUUCGGGC-----------UGCUGgg -5'
12592 3' -56.2 NC_003345.1 + 20021 0.7 0.546631
Target:  5'- -gAACCCGGCUGAcuuggAGUUCGACcucCCCg -3'
miRNA:   3'- ugUUGGGCUGACU-----UCGGGCUGcu-GGG- -5'
12592 3' -56.2 NC_003345.1 + 41469 0.7 0.545599
Target:  5'- uACGACCUGA--GAAGCgaguggacucuccCCGACGACCg -3'
miRNA:   3'- -UGUUGGGCUgaCUUCG-------------GGCUGCUGGg -5'
12592 3' -56.2 NC_003345.1 + 12226 0.7 0.536346
Target:  5'- aACGACCCGACgccuGaCCUGAcCGACCa -3'
miRNA:   3'- -UGUUGGGCUGacuuC-GGGCU-GCUGGg -5'
12592 3' -56.2 NC_003345.1 + 14524 0.79 0.180314
Target:  5'- cACGACCaCGAgUGGAGgCCGuGCGACCCc -3'
miRNA:   3'- -UGUUGG-GCUgACUUCgGGC-UGCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 1030 0.74 0.319786
Target:  5'- cAUAACCUGAaaGcGGCCCGAacCGGCCCu -3'
miRNA:   3'- -UGUUGGGCUgaCuUCGGGCU--GCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 3512 0.74 0.327394
Target:  5'- uCGACCCGAaggacGAAGCCauaguGACGACCUa -3'
miRNA:   3'- uGUUGGGCUga---CUUCGGg----CUGCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 39506 0.72 0.456975
Target:  5'- -aGGCCCGACgUGGuuAGCCCaauacguaGCGACCCc -3'
miRNA:   3'- ugUUGGGCUG-ACU--UCGGGc-------UGCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 8196 0.71 0.486055
Target:  5'- uCGuCCCGACUucGAGGCUUccaacgaaGACGACCCg -3'
miRNA:   3'- uGUuGGGCUGA--CUUCGGG--------CUGCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 32696 0.71 0.50492
Target:  5'- gGCAACaccuacaCCGGCUacgGcGGCCCGACGAUUCa -3'
miRNA:   3'- -UGUUG-------GGCUGA---CuUCGGGCUGCUGGG- -5'
12592 3' -56.2 NC_003345.1 + 23881 0.71 0.505922
Target:  5'- ---uCCCGACgUGggGCCgGACGcUCCa -3'
miRNA:   3'- uguuGGGCUG-ACuuCGGgCUGCuGGG- -5'
12592 3' -56.2 NC_003345.1 + 28549 0.71 0.505922
Target:  5'- aACGACUCGAUgcgucaAAGCCCGAaGACUCg -3'
miRNA:   3'- -UGUUGGGCUGac----UUCGGGCUgCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.