miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12593 3' -55.5 NC_003345.1 + 31834 0.66 0.83968
Target:  5'- gGGCGGuUGUAaGACCugccugaauugCGGAUGGAGu- -3'
miRNA:   3'- -CCGCCuACAUgCUGG-----------GCCUGCCUUgu -5'
12593 3' -55.5 NC_003345.1 + 43722 0.66 0.831143
Target:  5'- uGCGGAag-AUGAgCCGGAUGaGGACGu -3'
miRNA:   3'- cCGCCUacaUGCUgGGCCUGC-CUUGU- -5'
12593 3' -55.5 NC_003345.1 + 13184 0.66 0.812598
Target:  5'- --gGGAUGUucgggggACGGCCCGGACuuaaccaGAACGc -3'
miRNA:   3'- ccgCCUACA-------UGCUGGGCCUGc------CUUGU- -5'
12593 3' -55.5 NC_003345.1 + 1114 0.67 0.746707
Target:  5'- gGGCGGAaaacagGggGCGGCCCGG-CGaAACGg -3'
miRNA:   3'- -CCGCCUa-----Ca-UGCUGGGCCuGCcUUGU- -5'
12593 3' -55.5 NC_003345.1 + 57980 0.67 0.746707
Target:  5'- cGUGGGUGgc---CCCGGACGGGAa- -3'
miRNA:   3'- cCGCCUACaugcuGGGCCUGCCUUgu -5'
12593 3' -55.5 NC_003345.1 + 56079 0.69 0.674664
Target:  5'- gGGCGGAggugGUggcucuccacACGGCgCUGGugGGggUg -3'
miRNA:   3'- -CCGCCUa---CA----------UGCUG-GGCCugCCuuGu -5'
12593 3' -55.5 NC_003345.1 + 68265 0.69 0.653598
Target:  5'- aGGUGGAuUGguaugGCGACCCGGcucaGGAGgAa -3'
miRNA:   3'- -CCGCCU-ACa----UGCUGGGCCug--CCUUgU- -5'
12593 3' -55.5 NC_003345.1 + 38691 0.74 0.369077
Target:  5'- aGCGGAUGUACGACa---ACGGAACGu -3'
miRNA:   3'- cCGCCUACAUGCUGggccUGCCUUGU- -5'
12593 3' -55.5 NC_003345.1 + 1381 0.76 0.313821
Target:  5'- aGGgGGA-GUAUGGCCCGGACaaaGAGCGa -3'
miRNA:   3'- -CCgCCUaCAUGCUGGGCCUGc--CUUGU- -5'
12593 3' -55.5 NC_003345.1 + 320 0.8 0.167695
Target:  5'- gGGCGGggGgagagACGGCCCGcGCGGGGCAg -3'
miRNA:   3'- -CCGCCuaCa----UGCUGGGCcUGCCUUGU- -5'
12593 3' -55.5 NC_003345.1 + 77607 0.8 0.167695
Target:  5'- gGGCGGggGgagagACGGCCCGcGCGGGGCAg -3'
miRNA:   3'- -CCGCCuaCa----UGCUGGGCcUGCCUUGU- -5'
12593 3' -55.5 NC_003345.1 + 9612 1.1 0.001508
Target:  5'- uGGCGGAUGUACGACCCGGACGGAACAc -3'
miRNA:   3'- -CCGCCUACAUGCUGGGCCUGCCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.