miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12593 5' -53.8 NC_003345.1 + 47375 0.66 0.891157
Target:  5'- uGGUGuucaaacucAUCGGCCCACGuaucgaAGUCcCCGUc- -3'
miRNA:   3'- -CCAU---------UAGUCGGGUGC------UCAGcGGCAcu -5'
12593 5' -53.8 NC_003345.1 + 7995 0.67 0.844369
Target:  5'- uGGUGGUgCuGUCCACaGAGgaugaacuUCGCCGUGu -3'
miRNA:   3'- -CCAUUA-GuCGGGUG-CUC--------AGCGGCACu -5'
12593 5' -53.8 NC_003345.1 + 65535 0.67 0.835781
Target:  5'- aGGUAAUCA-CCaGCgGAGUCGUCGUa- -3'
miRNA:   3'- -CCAUUAGUcGGgUG-CUCAGCGGCAcu -5'
12593 5' -53.8 NC_003345.1 + 73215 0.68 0.799461
Target:  5'- cGGga---AGCCaCACGAgGUCGuuGUGAa -3'
miRNA:   3'- -CCauuagUCGG-GUGCU-CAGCggCACU- -5'
12593 5' -53.8 NC_003345.1 + 12594 0.69 0.733986
Target:  5'- uGUAAUCGGCUCGgGAguacgcuucguagagGUCGCCGUc- -3'
miRNA:   3'- cCAUUAGUCGGGUgCU---------------CAGCGGCAcu -5'
12593 5' -53.8 NC_003345.1 + 32513 0.69 0.718399
Target:  5'- aGGUcGAUgaAGCCCACGuacucgucgguguAGUUGUCGUGAg -3'
miRNA:   3'- -CCA-UUAg-UCGGGUGC-------------UCAGCGGCACU- -5'
12593 5' -53.8 NC_003345.1 + 36832 0.7 0.666385
Target:  5'- cGGcUGAaCAGCCCGCuGAGUCuCCGgUGAa -3'
miRNA:   3'- -CC-AUUaGUCGGGUG-CUCAGcGGC-ACU- -5'
12593 5' -53.8 NC_003345.1 + 42515 0.71 0.644873
Target:  5'- cGGcugAAUCGGU-CGCGGGUCGCCG-GAc -3'
miRNA:   3'- -CCa--UUAGUCGgGUGCUCAGCGGCaCU- -5'
12593 5' -53.8 NC_003345.1 + 63123 0.71 0.601791
Target:  5'- aGUAGUCGGCaguagcguaguCCAcCGAGUCGcCCGUGc -3'
miRNA:   3'- cCAUUAGUCG-----------GGU-GCUCAGC-GGCACu -5'
12593 5' -53.8 NC_003345.1 + 14471 0.73 0.485786
Target:  5'- cGGgaacGUCGGCuggcgacCCACGAG-CGCCGUGGa -3'
miRNA:   3'- -CCau--UAGUCG-------GGUGCUCaGCGGCACU- -5'
12593 5' -53.8 NC_003345.1 + 9646 1.12 0.001547
Target:  5'- aGGUAAUCAGCCCACGAGUCGCCGUGAa -3'
miRNA:   3'- -CCAUUAGUCGGGUGCUCAGCGGCACU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.