miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12595 3' -53.8 NC_003345.1 + 34831 0.66 0.871985
Target:  5'- uCCgaagaCCCACGaaGCACUCAuGGggGAACUa -3'
miRNA:   3'- uGGa----GGGUGU--UGUGAGU-CCgaCUUGG- -5'
12595 3' -53.8 NC_003345.1 + 25359 0.66 0.871985
Target:  5'- cUCUCUCGCGGCGuCUCgauaaGGuGCUGAACa -3'
miRNA:   3'- uGGAGGGUGUUGU-GAG-----UC-CGACUUGg -5'
12595 3' -53.8 NC_003345.1 + 27149 0.66 0.864064
Target:  5'- aAUCagCCACAACauccaucucGCUCAGGUUGAcgacgacggcaACCu -3'
miRNA:   3'- -UGGagGGUGUUG---------UGAGUCCGACU-----------UGG- -5'
12595 3' -53.8 NC_003345.1 + 6363 0.66 0.855906
Target:  5'- cAUCUCCCACuuCcCUCGGGaguaggGAACg -3'
miRNA:   3'- -UGGAGGGUGuuGuGAGUCCga----CUUGg -5'
12595 3' -53.8 NC_003345.1 + 35229 0.66 0.838908
Target:  5'- -gUUCuCCGCgAACGCUCGGacGCUGAugCa -3'
miRNA:   3'- ugGAG-GGUG-UUGUGAGUC--CGACUugG- -5'
12595 3' -53.8 NC_003345.1 + 50491 0.67 0.830085
Target:  5'- gGCCUCCCugAGCGCc---GCUGGAa- -3'
miRNA:   3'- -UGGAGGGugUUGUGagucCGACUUgg -5'
12595 3' -53.8 NC_003345.1 + 23069 0.67 0.821058
Target:  5'- gACUUCCCGCGACugUUGGaCUucuGCCg -3'
miRNA:   3'- -UGGAGGGUGUUGugAGUCcGAcu-UGG- -5'
12595 3' -53.8 NC_003345.1 + 33520 0.67 0.811835
Target:  5'- gACUUCuCCuCGGCGCUCAGGgaGucguCCu -3'
miRNA:   3'- -UGGAG-GGuGUUGUGAGUCCgaCuu--GG- -5'
12595 3' -53.8 NC_003345.1 + 14588 0.67 0.811835
Target:  5'- aGCgUUCCACGGCGCUCguGGGUcGccAGCCg -3'
miRNA:   3'- -UGgAGGGUGUUGUGAG--UCCGaC--UUGG- -5'
12595 3' -53.8 NC_003345.1 + 61055 0.68 0.773197
Target:  5'- uACCg-CCGcCGACGCUCGGGUgu-GCCg -3'
miRNA:   3'- -UGGagGGU-GUUGUGAGUCCGacuUGG- -5'
12595 3' -53.8 NC_003345.1 + 56730 0.68 0.732274
Target:  5'- gACCUCgCCuuCGAUacucgACUCAGGCcGAGCUu -3'
miRNA:   3'- -UGGAG-GGu-GUUG-----UGAGUCCGaCUUGG- -5'
12595 3' -53.8 NC_003345.1 + 73701 0.69 0.721769
Target:  5'- -aCUCCUACGGC-CUCAGGCgguACa -3'
miRNA:   3'- ugGAGGGUGUUGuGAGUCCGacuUGg -5'
12595 3' -53.8 NC_003345.1 + 27788 0.69 0.721769
Target:  5'- cACCgCCCu--GCGCUCGGGCaguuUGAACa -3'
miRNA:   3'- -UGGaGGGuguUGUGAGUCCG----ACUUGg -5'
12595 3' -53.8 NC_003345.1 + 45733 0.69 0.700509
Target:  5'- uCCUCUgaACAGCAC--GGGCUGAugCa -3'
miRNA:   3'- uGGAGGg-UGUUGUGagUCCGACUugG- -5'
12595 3' -53.8 NC_003345.1 + 29607 0.69 0.678987
Target:  5'- cCCUCUCGcCAugAUUCAGGC--GACCg -3'
miRNA:   3'- uGGAGGGU-GUugUGAGUCCGacUUGG- -5'
12595 3' -53.8 NC_003345.1 + 75291 0.69 0.678987
Target:  5'- cGCCUCaCCA--GCA---GGGCUGAACCg -3'
miRNA:   3'- -UGGAG-GGUguUGUgagUCCGACUUGG- -5'
12595 3' -53.8 NC_003345.1 + 52289 0.7 0.646402
Target:  5'- cGCUgaCCCACGAgACUCcGGCgaGAACCc -3'
miRNA:   3'- -UGGa-GGGUGUUgUGAGuCCGa-CUUGG- -5'
12595 3' -53.8 NC_003345.1 + 50593 0.7 0.624597
Target:  5'- gAUUUCCaGCGGCGCUCAGGgaG-GCCa -3'
miRNA:   3'- -UGGAGGgUGUUGUGAGUCCgaCuUGG- -5'
12595 3' -53.8 NC_003345.1 + 13376 1.12 0.001358
Target:  5'- cACCUCCCACAACACUCAGGCUGAACCu -3'
miRNA:   3'- -UGGAGGGUGUUGUGAGUCCGACUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.