miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12597 3' -61.1 NC_003345.1 + 9608 0.66 0.536322
Target:  5'- gGAGUGGcGGauGUaCGACCCgGACg -3'
miRNA:   3'- gCUCACCuCCggCAcGCUGGGgCUGa -5'
12597 3' -61.1 NC_003345.1 + 4572 0.66 0.526402
Target:  5'- uCGAGUGGGGuuCGauUGCGAUUgagCCGACUg -3'
miRNA:   3'- -GCUCACCUCcgGC--ACGCUGG---GGCUGA- -5'
12597 3' -61.1 NC_003345.1 + 63671 0.66 0.516553
Target:  5'- uCGAGUGGGGGCgcuccugccgaCGUGgGACUCgucgGACa -3'
miRNA:   3'- -GCUCACCUCCG-----------GCACgCUGGGg---CUGa -5'
12597 3' -61.1 NC_003345.1 + 70380 0.66 0.497083
Target:  5'- uGAGaUGGAGGCUGa-CGACCuugCCGACc -3'
miRNA:   3'- gCUC-ACCUCCGGCacGCUGG---GGCUGa -5'
12597 3' -61.1 NC_003345.1 + 60678 0.67 0.477951
Target:  5'- aCGAGUGcGAacgacgugGGuaGUGcCGACCUCGACUu -3'
miRNA:   3'- -GCUCAC-CU--------CCggCAC-GCUGGGGCUGA- -5'
12597 3' -61.1 NC_003345.1 + 18503 0.67 0.468521
Target:  5'- aCGAGUcgGGAGGCCaccGCGACCUCcucACUc -3'
miRNA:   3'- -GCUCA--CCUCCGGca-CGCUGGGGc--UGA- -5'
12597 3' -61.1 NC_003345.1 + 72426 0.68 0.405392
Target:  5'- aCGcGcUGGAGccGCCGggcggcgGUGGCCCCGACg -3'
miRNA:   3'- -GCuC-ACCUC--CGGCa------CGCUGGGGCUGa -5'
12597 3' -61.1 NC_003345.1 + 62841 0.69 0.371807
Target:  5'- cCGAGcuucgcccGGAGGCCa-GCGuagGCCCCGACg -3'
miRNA:   3'- -GCUCa-------CCUCCGGcaCGC---UGGGGCUGa -5'
12597 3' -61.1 NC_003345.1 + 53777 0.7 0.296457
Target:  5'- gGAGUuggccgGGAGGU--UGUGACCCCGACc -3'
miRNA:   3'- gCUCA------CCUCCGgcACGCUGGGGCUGa -5'
12597 3' -61.1 NC_003345.1 + 18393 0.71 0.276292
Target:  5'- aGAGUgaGGAGGUCGcgGUGGCcuCCCGACUc -3'
miRNA:   3'- gCUCA--CCUCCGGCa-CGCUG--GGGCUGA- -5'
12597 3' -61.1 NC_003345.1 + 63947 0.72 0.251129
Target:  5'- uGAGUgGGAGGCCGUGgGAaacguuccaCCCgGAUg -3'
miRNA:   3'- gCUCA-CCUCCGGCACgCU---------GGGgCUGa -5'
12597 3' -61.1 NC_003345.1 + 8086 0.73 0.196456
Target:  5'- cCGGuGUGGaAGGCCGgucaguugacCGACCCCGACg -3'
miRNA:   3'- -GCU-CACC-UCCGGCac--------GCUGGGGCUGa -5'
12597 3' -61.1 NC_003345.1 + 14531 1.08 0.000571
Target:  5'- aCGAGUGGAGGCCGUGCGACCCCGACUa -3'
miRNA:   3'- -GCUCACCUCCGGCACGCUGGGGCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.