Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12605 | 3' | -57.6 | NC_003345.1 | + | 50432 | 0.66 | 0.727306 |
Target: 5'- uCGUaUCGGGaggUGGAGCCGCUGG-CGg- -3' miRNA: 3'- -GCA-AGCUCg--ACUUCGGCGGCCuGCgg -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 28434 | 0.66 | 0.717163 |
Target: 5'- aCGUaugcCGAGUUGAuggGGCCGUgggaggauUGGGCGCa -3' miRNA: 3'- -GCAa---GCUCGACU---UCGGCG--------GCCUGCGg -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 72637 | 0.66 | 0.717163 |
Target: 5'- --aUCGAGCagacggagGAAGauauugCGCCGGuCGCCc -3' miRNA: 3'- gcaAGCUCGa-------CUUCg-----GCGGCCuGCGG- -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 33723 | 0.66 | 0.696657 |
Target: 5'- aGUUCGAGUcGguGUCGCCauAUGCCa -3' miRNA: 3'- gCAAGCUCGaCuuCGGCGGccUGCGG- -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 32592 | 0.66 | 0.696657 |
Target: 5'- --aUCGAGUccGAGGUCGCUcgGGugGCUc -3' miRNA: 3'- gcaAGCUCGa-CUUCGGCGG--CCugCGG- -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 45346 | 0.66 | 0.696657 |
Target: 5'- ---cCGAGCUGAAccGCCGCCuucuCGCUc -3' miRNA: 3'- gcaaGCUCGACUU--CGGCGGccu-GCGG- -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 62935 | 0.66 | 0.696657 |
Target: 5'- ----gGAGCUGGAGUaguuCGCCGGGucgagGCCg -3' miRNA: 3'- gcaagCUCGACUUCG----GCGGCCUg----CGG- -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 16834 | 0.66 | 0.686315 |
Target: 5'- aCGUUCcccgauuguaGAGCaucAGCCGCCGGAacuUGCUc -3' miRNA: 3'- -GCAAG----------CUCGacuUCGGCGGCCU---GCGG- -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 63189 | 0.66 | 0.686315 |
Target: 5'- --cUCGGcucucGCUGAGGgUGCUGGugGCg -3' miRNA: 3'- gcaAGCU-----CGACUUCgGCGGCCugCGg -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 46076 | 0.67 | 0.634081 |
Target: 5'- aCGUUCGAGagcGAGCCGgUGaGAgGCCc -3' miRNA: 3'- -GCAAGCUCgacUUCGGCgGC-CUgCGG- -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 33235 | 0.67 | 0.634081 |
Target: 5'- aCGUUCuccUUGAGGCCGuuGaACGCCg -3' miRNA: 3'- -GCAAGcucGACUUCGGCggCcUGCGG- -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 47533 | 0.67 | 0.623594 |
Target: 5'- uGUUcCGAcgagucGCUGAGaacGUCGCCGGA-GCCg -3' miRNA: 3'- gCAA-GCU------CGACUU---CGGCGGCCUgCGG- -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 23069 | 0.68 | 0.602648 |
Target: 5'- cCGUUCGGGCc---GUCGUCGGACGa- -3' miRNA: 3'- -GCAAGCUCGacuuCGGCGGCCUGCgg -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 51454 | 0.68 | 0.589079 |
Target: 5'- uCGUUCGAuuaccucuaccggcGCUGGAGCCuCCGG-C-CCg -3' miRNA: 3'- -GCAAGCU--------------CGACUUCGGcGGCCuGcGG- -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 71040 | 0.68 | 0.571421 |
Target: 5'- -cUUCGGGCUGucGUCGuCCGGugGg- -3' miRNA: 3'- gcAAGCUCGACuuCGGC-GGCCugCgg -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 50035 | 0.68 | 0.571421 |
Target: 5'- ------cGCcGGAGCCGCCGGA-GCCu -3' miRNA: 3'- gcaagcuCGaCUUCGGCGGCCUgCGG- -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 42517 | 0.69 | 0.530443 |
Target: 5'- --cUCG-GCUGAaucGGUCGCgGGuCGCCg -3' miRNA: 3'- gcaAGCuCGACU---UCGGCGgCCuGCGG- -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 47106 | 0.69 | 0.530443 |
Target: 5'- aCGUcUCGucaaagacccGCaUGAAGCUcaccggGCCGGACGCCu -3' miRNA: 3'- -GCA-AGCu---------CG-ACUUCGG------CGGCCUGCGG- -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 58139 | 0.7 | 0.490585 |
Target: 5'- cCGgcugUCGAGCUGuucguAAGCauCGCCGGGgGCa -3' miRNA: 3'- -GCa---AGCUCGAC-----UUCG--GCGGCCUgCGg -5' |
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12605 | 3' | -57.6 | NC_003345.1 | + | 21806 | 0.7 | 0.461627 |
Target: 5'- ---cCGAGC--GAGCCGCUGGA-GCCg -3' miRNA: 3'- gcaaGCUCGacUUCGGCGGCCUgCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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