miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1261 3' -51.3 NC_001317.1 + 570 0.68 0.664441
Target:  5'- cGGUCGCg--CUCUGcGCcg-GGUCGGUc -3'
miRNA:   3'- -CCAGCGauaGAGAC-CGuauUCGGUCG- -5'
1261 3' -51.3 NC_001317.1 + 1090 0.68 0.664441
Target:  5'- cGGUCaGCUucUCcgggCUGGCAaaGAGCCuGCg -3'
miRNA:   3'- -CCAG-CGAu-AGa---GACCGUa-UUCGGuCG- -5'
1261 3' -51.3 NC_001317.1 + 5091 0.66 0.734226
Target:  5'- cGGUCGUg----CUGGCgAUGGuGCCGGUc -3'
miRNA:   3'- -CCAGCGauagaGACCG-UAUU-CGGUCG- -5'
1261 3' -51.3 NC_001317.1 + 7755 0.66 0.778555
Target:  5'- -aUCGCUgcGUUUCUGGaCAU--GCUGGCg -3'
miRNA:   3'- ccAGCGA--UAGAGACC-GUAuuCGGUCG- -5'
1261 3' -51.3 NC_001317.1 + 7917 0.77 0.206611
Target:  5'- uGGUCGCUguaaucggugaaaAUCUCUGGUcugccAUcaAGGCCAGUg -3'
miRNA:   3'- -CCAGCGA-------------UAGAGACCG-----UA--UUCGGUCG- -5'
1261 3' -51.3 NC_001317.1 + 9159 0.66 0.745523
Target:  5'- cGGUUGCUAUgUaugcaaacGGUgaauuaGUGAGCCAGUg -3'
miRNA:   3'- -CCAGCGAUAgAga------CCG------UAUUCGGUCG- -5'
1261 3' -51.3 NC_001317.1 + 11005 1.16 0.000367
Target:  5'- aGGUCGCUAUCUCUGGCAUAAGCCAGCa -3'
miRNA:   3'- -CCAGCGAUAGAGACCGUAUUCGGUCG- -5'
1261 3' -51.3 NC_001317.1 + 11707 0.66 0.767702
Target:  5'- --gCGCaggCUCUGGCAgcAGCCAc- -3'
miRNA:   3'- ccaGCGauaGAGACCGUauUCGGUcg -5'
1261 3' -51.3 NC_001317.1 + 14233 0.7 0.501018
Target:  5'- cGGUCGCaaccgcaAUCgUC-GGCAUGgucuggacAGCCAGCg -3'
miRNA:   3'- -CCAGCGa------UAG-AGaCCGUAU--------UCGGUCG- -5'
1261 3' -51.3 NC_001317.1 + 15687 0.73 0.357625
Target:  5'- -uUCGCcagUGUCgucacgCUGGUAaGAGCCAGCa -3'
miRNA:   3'- ccAGCG---AUAGa-----GACCGUaUUCGGUCG- -5'
1261 3' -51.3 NC_001317.1 + 21032 0.68 0.664441
Target:  5'- -aUCGCUugGUCgCUGGUucAAGuCCAGCa -3'
miRNA:   3'- ccAGCGA--UAGaGACCGuaUUC-GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.