miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12617 3' -56.6 NC_003345.1 + 4738 0.72 0.42298
Target:  5'- cUCGGUCGAuuGCGuuGaaCGGCCUuCCGUc -3'
miRNA:   3'- -AGCCAGCUu-UGCggCa-GUCGGA-GGCG- -5'
12617 3' -56.6 NC_003345.1 + 7170 0.71 0.46022
Target:  5'- uUCGGUCGGGcuaucACGUCGUgGGUCUUgGUa -3'
miRNA:   3'- -AGCCAGCUU-----UGCGGCAgUCGGAGgCG- -5'
12617 3' -56.6 NC_003345.1 + 21239 0.67 0.706454
Target:  5'- uUCcGUCGAuuaccuccACGUCGUCAGCgUCCa- -3'
miRNA:   3'- -AGcCAGCUu-------UGCGGCAGUCGgAGGcg -5'
12617 3' -56.6 NC_003345.1 + 21340 0.76 0.241653
Target:  5'- uUCGGUCGGAGCGCCGUU-GUCgUCgGUg -3'
miRNA:   3'- -AGCCAGCUUUGCGGCAGuCGG-AGgCG- -5'
12617 3' -56.6 NC_003345.1 + 29213 0.68 0.622742
Target:  5'- uUCGGcuUCGuagaGCCaUCAGgCUCCGCg -3'
miRNA:   3'- -AGCC--AGCuuugCGGcAGUCgGAGGCG- -5'
12617 3' -56.6 NC_003345.1 + 31130 1.12 0.000876
Target:  5'- uUCGGUCGAAACGCCGUCAGCCUCCGCu -3'
miRNA:   3'- -AGCCAGCUUUGCGGCAGUCGGAGGCG- -5'
12617 3' -56.6 NC_003345.1 + 32773 0.66 0.785874
Target:  5'- cCGGUgCGAGAgaGCgGUCGGCgUugacaCCGCg -3'
miRNA:   3'- aGCCA-GCUUUg-CGgCAGUCGgA-----GGCG- -5'
12617 3' -56.6 NC_003345.1 + 33419 0.71 0.4698
Target:  5'- aUCGaGUCGGAaguaaACGUCGUUGGCCgcuUUCGCa -3'
miRNA:   3'- -AGC-CAGCUU-----UGCGGCAGUCGG---AGGCG- -5'
12617 3' -56.6 NC_003345.1 + 34235 0.71 0.499127
Target:  5'- cUCGGggCGAAGCGCCcuUCGGCgUgCCGUc -3'
miRNA:   3'- -AGCCa-GCUUUGCGGc-AGUCGgA-GGCG- -5'
12617 3' -56.6 NC_003345.1 + 43021 0.67 0.726909
Target:  5'- -aGGUCGAuAC-CUGUCAG-CUCaCGCu -3'
miRNA:   3'- agCCAGCUuUGcGGCAGUCgGAG-GCG- -5'
12617 3' -56.6 NC_003345.1 + 47445 0.66 0.776354
Target:  5'- cUC-GUCGGAACagGUCGUCAGCCcCCu- -3'
miRNA:   3'- -AGcCAGCUUUG--CGGCAGUCGGaGGcg -5'
12617 3' -56.6 NC_003345.1 + 50102 0.67 0.706454
Target:  5'- gCGGUgGAGcuauuauCGuuGUCAGCC-CCGg -3'
miRNA:   3'- aGCCAgCUUu------GCggCAGUCGGaGGCg -5'
12617 3' -56.6 NC_003345.1 + 53114 0.72 0.42298
Target:  5'- aCGGUCGucuCGCCGUCAaUCUCCu- -3'
miRNA:   3'- aGCCAGCuuuGCGGCAGUcGGAGGcg -5'
12617 3' -56.6 NC_003345.1 + 54043 0.66 0.765726
Target:  5'- gCGG-CGAGAacCGCgaGUCGGacgaaaaCCUCCGCg -3'
miRNA:   3'- aGCCaGCUUU--GCGg-CAGUC-------GGAGGCG- -5'
12617 3' -56.6 NC_003345.1 + 58041 0.66 0.756916
Target:  5'- uUUGGcUCGAAcgaGCCgGUCuGGUCUCUGCg -3'
miRNA:   3'- -AGCC-AGCUUug-CGG-CAG-UCGGAGGCG- -5'
12617 3' -56.6 NC_003345.1 + 58793 0.66 0.737011
Target:  5'- aUCGGagUGAacauauccacAACGCCGUCGugUUCCGCa -3'
miRNA:   3'- -AGCCa-GCU----------UUGCGGCAGUcgGAGGCG- -5'
12617 3' -56.6 NC_003345.1 + 62954 0.68 0.654323
Target:  5'- -gGGUCGAggccgggaacAGCGCCGacgaUAGCCagCGCa -3'
miRNA:   3'- agCCAGCU----------UUGCGGCa---GUCGGagGCG- -5'
12617 3' -56.6 NC_003345.1 + 63942 0.69 0.600662
Target:  5'- -aGGUCGAAGCGCagaGUgUAGUaauagcgauuaauCUCCGCu -3'
miRNA:   3'- agCCAGCUUUGCGg--CA-GUCG-------------GAGGCG- -5'
12617 3' -56.6 NC_003345.1 + 67855 0.66 0.772508
Target:  5'- gUCGGUCGAugccgagugaacagAACGUCGU--GCCauuauagagugauUCCGCc -3'
miRNA:   3'- -AGCCAGCU--------------UUGCGGCAguCGG-------------AGGCG- -5'
12617 3' -56.6 NC_003345.1 + 70274 0.79 0.169123
Target:  5'- -aGGUCGGcAAgGUCGUCAGCCUCCa- -3'
miRNA:   3'- agCCAGCU-UUgCGGCAGUCGGAGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.