miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1263 5' -51.1 NC_001317.1 + 15607 0.66 0.778556
Target:  5'- -cAGCGCcacaucAgGCAGGCcaccgACAGACCa -3'
miRNA:   3'- guUUGCG------UgCGUCCGacua-UGUCUGG- -5'
1263 5' -51.1 NC_001317.1 + 12782 0.66 0.774235
Target:  5'- aGGACGCgagcacaGCGCaaaaaggcauugugAGGCUGAguagugcgGCAGACa -3'
miRNA:   3'- gUUUGCG-------UGCG--------------UCCGACUa-------UGUCUGg -5'
1263 5' -51.1 NC_001317.1 + 8607 0.66 0.766608
Target:  5'- ----gGCacugGCGCAGGCUGuucggguGUGCAG-CCg -3'
miRNA:   3'- guuugCG----UGCGUCCGAC-------UAUGUCuGG- -5'
1263 5' -51.1 NC_001317.1 + 9301 0.66 0.755576
Target:  5'- -cGACGUGcCGCcggugacAGGCUGGcaauCAGACCg -3'
miRNA:   3'- guUUGCGU-GCG-------UCCGACUau--GUCUGG- -5'
1263 5' -51.1 NC_001317.1 + 30218 0.67 0.734226
Target:  5'- -uAAUGCuuAUGguGGCgUGGUcaaACAGACCg -3'
miRNA:   3'- guUUGCG--UGCguCCG-ACUA---UGUCUGG- -5'
1263 5' -51.1 NC_001317.1 + 4380 0.67 0.68799
Target:  5'- aAAGCGCugcaGCGGGUUGugcuucGCAGugCg -3'
miRNA:   3'- gUUUGCGug--CGUCCGACua----UGUCugG- -5'
1263 5' -51.1 NC_001317.1 + 5677 0.67 0.68799
Target:  5'- --uACGCugGCAGGUUgccGAUGCGcuucuGGCUg -3'
miRNA:   3'- guuUGCGugCGUCCGA---CUAUGU-----CUGG- -5'
1263 5' -51.1 NC_001317.1 + 21842 0.68 0.67624
Target:  5'- -uGGCGCACGguGGuCUGA----GGCCg -3'
miRNA:   3'- guUUGCGUGCguCC-GACUauguCUGG- -5'
1263 5' -51.1 NC_001317.1 + 20658 0.68 0.664441
Target:  5'- --cGCGCAUGUGcGGCUGAUGgcacuuCGGACa -3'
miRNA:   3'- guuUGCGUGCGU-CCGACUAU------GUCUGg -5'
1263 5' -51.1 NC_001317.1 + 20181 0.68 0.652608
Target:  5'- gAAGCGCGCG-AGGgUGAgUAUAuGGCCg -3'
miRNA:   3'- gUUUGCGUGCgUCCgACU-AUGU-CUGG- -5'
1263 5' -51.1 NC_001317.1 + 14645 0.68 0.640752
Target:  5'- -cAGCGCAUG-GGGCUGua--AGACCa -3'
miRNA:   3'- guUUGCGUGCgUCCGACuaugUCUGG- -5'
1263 5' -51.1 NC_001317.1 + 20244 0.69 0.568678
Target:  5'- --uACGCuucuaagGCGCAGGC-GAUGCGuGCCg -3'
miRNA:   3'- guuUGCG-------UGCGUCCGaCUAUGUcUGG- -5'
1263 5' -51.1 NC_001317.1 + 10468 0.7 0.523605
Target:  5'- --cGCGCAUGCucuGGCUGAUGuguuCAGugUc -3'
miRNA:   3'- guuUGCGUGCGu--CCGACUAU----GUCugG- -5'
1263 5' -51.1 NC_001317.1 + 16693 0.7 0.523605
Target:  5'- ---cCGCGCGCAGGC----GCAGGCa -3'
miRNA:   3'- guuuGCGUGCGUCCGacuaUGUCUGg -5'
1263 5' -51.1 NC_001317.1 + 15592 0.71 0.501018
Target:  5'- --cGCGC-CGgGGGCUGAUGCcguGCCg -3'
miRNA:   3'- guuUGCGuGCgUCCGACUAUGuc-UGG- -5'
1263 5' -51.1 NC_001317.1 + 7294 0.72 0.446585
Target:  5'- aCGGGCGCACugaGGGCgUGGUugAGACg -3'
miRNA:   3'- -GUUUGCGUGcg-UCCG-ACUAugUCUGg -5'
1263 5' -51.1 NC_001317.1 + 26283 0.72 0.436095
Target:  5'- -uAACGCAgCGCGGGCUGGUGacu-CCu -3'
miRNA:   3'- guUUGCGU-GCGUCCGACUAUgucuGG- -5'
1263 5' -51.1 NC_001317.1 + 14314 0.72 0.425748
Target:  5'- gCAucCGCAuCGCuGGCUGuc-CAGACCa -3'
miRNA:   3'- -GUuuGCGU-GCGuCCGACuauGUCUGG- -5'
1263 5' -51.1 NC_001317.1 + 4078 0.73 0.366877
Target:  5'- aCAGGC-CGCGCAGGUguucaagguUGAUACGGcaACCg -3'
miRNA:   3'- -GUUUGcGUGCGUCCG---------ACUAUGUC--UGG- -5'
1263 5' -51.1 NC_001317.1 + 9117 0.76 0.232153
Target:  5'- aCGAGCGUGCGCucggugagccucAGGCUGAUACuGAUa -3'
miRNA:   3'- -GUUUGCGUGCG------------UCCGACUAUGuCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.