miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12641 5' -52.7 NC_003345.1 + 51953 1.07 0.003557
Target:  5'- uUCCGACACCGAGAAGGCGAACUCAAUa -3'
miRNA:   3'- -AGGCUGUGGCUCUUCCGCUUGAGUUA- -5'
12641 5' -52.7 NC_003345.1 + 58731 0.78 0.277133
Target:  5'- -aCGACACCGAGAAcgauauuguGGCGAGCUUAu- -3'
miRNA:   3'- agGCUGUGGCUCUU---------CCGCUUGAGUua -5'
12641 5' -52.7 NC_003345.1 + 20869 0.74 0.465391
Target:  5'- cCCGACGCCGAGGGaa-GGACUCGAa -3'
miRNA:   3'- aGGCUGUGGCUCUUccgCUUGAGUUa -5'
12641 5' -52.7 NC_003345.1 + 20140 0.73 0.527243
Target:  5'- cCCGAUACCaucGGGGAGGuCGAACUCc-- -3'
miRNA:   3'- aGGCUGUGG---CUCUUCC-GCUUGAGuua -5'
12641 5' -52.7 NC_003345.1 + 38391 0.72 0.59191
Target:  5'- gUUCGAguCCGGGGAGuaGGACUCAAUc -3'
miRNA:   3'- -AGGCUguGGCUCUUCcgCUUGAGUUA- -5'
12641 5' -52.7 NC_003345.1 + 71019 0.72 0.602854
Target:  5'- aCCG-CGCCGAGGAuGGUGAGCUgGu- -3'
miRNA:   3'- aGGCuGUGGCUCUU-CCGCUUGAgUua -5'
12641 5' -52.7 NC_003345.1 + 19445 0.72 0.613823
Target:  5'- cUCCGACGCuCGuGAAGGagaCGAACUCc-- -3'
miRNA:   3'- -AGGCUGUG-GCuCUUCC---GCUUGAGuua -5'
12641 5' -52.7 NC_003345.1 + 28339 0.71 0.668711
Target:  5'- aCC-ACACCGAGAAGGgGAG-UCAGa -3'
miRNA:   3'- aGGcUGUGGCUCUUCCgCUUgAGUUa -5'
12641 5' -52.7 NC_003345.1 + 51301 0.7 0.698077
Target:  5'- cUCGAC-CCGAGAuacguuaacgagacAGGCG-ACUCGAUg -3'
miRNA:   3'- aGGCUGuGGCUCU--------------UCCGCuUGAGUUA- -5'
12641 5' -52.7 NC_003345.1 + 30687 0.7 0.712063
Target:  5'- gUCCGACucggaACCGAGAGGGaacgcgguCGGGCUUGAc -3'
miRNA:   3'- -AGGCUG-----UGGCUCUUCC--------GCUUGAGUUa -5'
12641 5' -52.7 NC_003345.1 + 52500 0.69 0.784466
Target:  5'- gCUGACGCCGAGAcgguucAGGgGAACa---- -3'
miRNA:   3'- aGGCUGUGGCUCU------UCCgCUUGaguua -5'
12641 5' -52.7 NC_003345.1 + 76325 0.68 0.794268
Target:  5'- cUCCGAaaGCCGAGAAGG-GGAUUCc-- -3'
miRNA:   3'- -AGGCUg-UGGCUCUUCCgCUUGAGuua -5'
12641 5' -52.7 NC_003345.1 + 29798 0.68 0.794268
Target:  5'- cCCGAUACCGuG-GGGCGAccgcCUCGGUc -3'
miRNA:   3'- aGGCUGUGGCuCuUCCGCUu---GAGUUA- -5'
12641 5' -52.7 NC_003345.1 + 33875 0.68 0.794268
Target:  5'- -aCGACGCCacccugaaagacGGGAAGGgGAaACUCAGUa -3'
miRNA:   3'- agGCUGUGG------------CUCUUCCgCU-UGAGUUA- -5'
12641 5' -52.7 NC_003345.1 + 23792 0.68 0.794268
Target:  5'- -aCGAgcuuCACCGAGAGGuGCGAagaaugaccACUCAAa -3'
miRNA:   3'- agGCU----GUGGCUCUUC-CGCU---------UGAGUUa -5'
12641 5' -52.7 NC_003345.1 + 43453 0.68 0.813355
Target:  5'- cCCGAC-CagcAGAAGGCGAuGCUCGAa -3'
miRNA:   3'- aGGCUGuGgc-UCUUCCGCU-UGAGUUa -5'
12641 5' -52.7 NC_003345.1 + 3380 0.68 0.813355
Target:  5'- aCCGGCGgaGAGAGcGGCGGAUUgCGAUg -3'
miRNA:   3'- aGGCUGUggCUCUU-CCGCUUGA-GUUA- -5'
12641 5' -52.7 NC_003345.1 + 68274 0.68 0.831684
Target:  5'- -aCGACGCUGAGGuggauugguauGGCGAcccgGCUCAGg -3'
miRNA:   3'- agGCUGUGGCUCUu----------CCGCU----UGAGUUa -5'
12641 5' -52.7 NC_003345.1 + 45452 0.67 0.864953
Target:  5'- --gGugAgCGAGAAGGCGGcgguucaGCUCGGUa -3'
miRNA:   3'- aggCugUgGCUCUUCCGCU-------UGAGUUA- -5'
12641 5' -52.7 NC_003345.1 + 68554 0.67 0.865759
Target:  5'- aCCGACGCCGAuAAcGuaGAACUCGu- -3'
miRNA:   3'- aGGCUGUGGCUcUU-CcgCUUGAGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.