Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12641 | 5' | -52.7 | NC_003345.1 | + | 3380 | 0.68 | 0.813355 |
Target: 5'- aCCGGCGgaGAGAGcGGCGGAUUgCGAUg -3' miRNA: 3'- aGGCUGUggCUCUU-CCGCUUGA-GUUA- -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 19445 | 0.72 | 0.613823 |
Target: 5'- cUCCGACGCuCGuGAAGGagaCGAACUCc-- -3' miRNA: 3'- -AGGCUGUG-GCuCUUCC---GCUUGAGuua -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 19996 | 0.66 | 0.902868 |
Target: 5'- uUCCGACguacACCGAGAAcGGCccGAACcCGGc -3' miRNA: 3'- -AGGCUG----UGGCUCUU-CCG--CUUGaGUUa -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 20140 | 0.73 | 0.527243 |
Target: 5'- cCCGAUACCaucGGGGAGGuCGAACUCc-- -3' miRNA: 3'- aGGCUGUGG---CUCUUCC-GCUUGAGuua -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 20869 | 0.74 | 0.465391 |
Target: 5'- cCCGACGCCGAGGGaa-GGACUCGAa -3' miRNA: 3'- aGGCUGUGGCUCUUccgCUUGAGUUa -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 23792 | 0.68 | 0.794268 |
Target: 5'- -aCGAgcuuCACCGAGAGGuGCGAagaaugaccACUCAAa -3' miRNA: 3'- agGCU----GUGGCUCUUC-CGCU---------UGAGUUa -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 24486 | 0.66 | 0.9095 |
Target: 5'- cCCGgugaGCAUCGAGGAgcuGGUGGACUUGAc -3' miRNA: 3'- aGGC----UGUGGCUCUU---CCGCUUGAGUUa -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 26544 | 0.66 | 0.902868 |
Target: 5'- cUCaCGACgcGCCGAGAGGucGCGuuCUCAAg -3' miRNA: 3'- -AG-GCUG--UGGCUCUUC--CGCuuGAGUUa -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 28339 | 0.71 | 0.668711 |
Target: 5'- aCC-ACACCGAGAAGGgGAG-UCAGa -3' miRNA: 3'- aGGcUGUGGCUCUUCCgCUUgAGUUa -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 29798 | 0.68 | 0.794268 |
Target: 5'- cCCGAUACCGuG-GGGCGAccgcCUCGGUc -3' miRNA: 3'- aGGCUGUGGCuCuUCCGCUu---GAGUUA- -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 30687 | 0.7 | 0.712063 |
Target: 5'- gUCCGACucggaACCGAGAGGGaacgcgguCGGGCUUGAc -3' miRNA: 3'- -AGGCUG-----UGGCUCUUCC--------GCUUGAGUUa -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 32465 | 0.66 | 0.888801 |
Target: 5'- cCCGACGCCGAccucGAugcGGUGAGC-CAc- -3' miRNA: 3'- aGGCUGUGGCU----CUu--CCGCUUGaGUua -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 33875 | 0.68 | 0.794268 |
Target: 5'- -aCGACGCCacccugaaagacGGGAAGGgGAaACUCAGUa -3' miRNA: 3'- agGCUGUGG------------CUCUUCCgCU-UGAGUUA- -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 33915 | 0.66 | 0.895967 |
Target: 5'- cUCCGGCuacCCGuGuaaAAGGCGAacacgGCUCAAc -3' miRNA: 3'- -AGGCUGu--GGCuC---UUCCGCU-----UGAGUUa -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 38391 | 0.72 | 0.59191 |
Target: 5'- gUUCGAguCCGGGGAGuaGGACUCAAUc -3' miRNA: 3'- -AGGCUguGGCUCUUCcgCUUGAGUUA- -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 43453 | 0.68 | 0.813355 |
Target: 5'- cCCGAC-CagcAGAAGGCGAuGCUCGAa -3' miRNA: 3'- aGGCUGuGgc-UCUUCCGCU-UGAGUUa -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 45452 | 0.67 | 0.864953 |
Target: 5'- --gGugAgCGAGAAGGCGGcgguucaGCUCGGUa -3' miRNA: 3'- aggCugUgGCUCUUCCGCU-------UGAGUUA- -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 51301 | 0.7 | 0.698077 |
Target: 5'- cUCGAC-CCGAGAuacguuaacgagacAGGCG-ACUCGAUg -3' miRNA: 3'- aGGCUGuGGCUCU--------------UCCGCuUGAGUUA- -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 51953 | 1.07 | 0.003557 |
Target: 5'- uUCCGACACCGAGAAGGCGAACUCAAUa -3' miRNA: 3'- -AGGCUGUGGCUCUUCCGCUUGAGUUA- -5' |
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12641 | 5' | -52.7 | NC_003345.1 | + | 52500 | 0.69 | 0.784466 |
Target: 5'- gCUGACGCCGAGAcgguucAGGgGAACa---- -3' miRNA: 3'- aGGCUGUGGCUCU------UCCgCUUGaguua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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