miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12648 5' -56.8 NC_003345.1 + 205 0.68 0.619103
Target:  5'- cCUGCCcCUGCC-CCGC--GCGGGCCg -3'
miRNA:   3'- uGAUGGuGGCGGuGGUGguCGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 681 0.66 0.744665
Target:  5'- --gGCCgACCGCC-CCgguuaacaucaaACCggGGCGGGCCg -3'
miRNA:   3'- ugaUGG-UGGCGGuGG------------UGG--UCGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 2246 0.69 0.565253
Target:  5'- --cGCCACCGacuaCACCGCCAaCGAcuacaacGCCu -3'
miRNA:   3'- ugaUGGUGGCg---GUGGUGGUcGCU-------UGG- -5'
12648 5' -56.8 NC_003345.1 + 2711 0.72 0.409151
Target:  5'- cACUACCGCCGUCGCCGUC-GCu-ACCg -3'
miRNA:   3'- -UGAUGGUGGCGGUGGUGGuCGcuUGG- -5'
12648 5' -56.8 NC_003345.1 + 5402 0.66 0.734544
Target:  5'- cCUcauCCACCGCaUACuCugCGGCGAAUa -3'
miRNA:   3'- uGAu--GGUGGCG-GUG-GugGUCGCUUGg -5'
12648 5' -56.8 NC_003345.1 + 5678 0.69 0.57679
Target:  5'- cGCUACgaaauCACCGUUACUGCCAGCu--CCg -3'
miRNA:   3'- -UGAUG-----GUGGCGGUGGUGGUCGcuuGG- -5'
12648 5' -56.8 NC_003345.1 + 6206 0.71 0.418194
Target:  5'- --aACCACCGau-UCAuCCAGCGAGCCu -3'
miRNA:   3'- ugaUGGUGGCgguGGU-GGUCGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 7447 0.69 0.524901
Target:  5'- cACcGCCACUuugcuugguaGCCGCgACCGGCcAGCCa -3'
miRNA:   3'- -UGaUGGUGG----------CGGUGgUGGUCGcUUGG- -5'
12648 5' -56.8 NC_003345.1 + 7601 0.67 0.650976
Target:  5'- --aACCGCCGCCcuCCuuauccugagugACCGGCGuuCCa -3'
miRNA:   3'- ugaUGGUGGCGGu-GG------------UGGUCGCuuGG- -5'
12648 5' -56.8 NC_003345.1 + 8025 0.7 0.474881
Target:  5'- --cGCCgcGCCGCCAucCCACCAaCGAACUu -3'
miRNA:   3'- ugaUGG--UGGCGGU--GGUGGUcGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 9117 0.75 0.275299
Target:  5'- cACUACCACCauu-CCACCAGCGccGCCg -3'
miRNA:   3'- -UGAUGGUGGcgguGGUGGUCGCu-UGG- -5'
12648 5' -56.8 NC_003345.1 + 11644 0.68 0.624415
Target:  5'- cACUcCCACCacaagggagagaacgGCCugauucacacuaacuCCuACCAGCGAGCCg -3'
miRNA:   3'- -UGAuGGUGG---------------CGGu--------------GG-UGGUCGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 12682 0.67 0.66158
Target:  5'- cAUUA-UACCGUCACCucagcggcgugaGCCGGuCGAACCg -3'
miRNA:   3'- -UGAUgGUGGCGGUGG------------UGGUC-GCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 12946 0.68 0.597892
Target:  5'- cCUACCACCaccccucgaaGcCCAUCACUugacgGGCGAGCUg -3'
miRNA:   3'- uGAUGGUGG----------C-GGUGGUGG-----UCGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 16686 0.66 0.723299
Target:  5'- uACUgGCCgACUGCCAacgaCACCuGCGAcuuguucACCg -3'
miRNA:   3'- -UGA-UGG-UGGCGGUg---GUGGuCGCU-------UGG- -5'
12648 5' -56.8 NC_003345.1 + 18768 0.67 0.647791
Target:  5'- ---cCCACCGaCCG-CACCAGCGGugagaagcaugaacGCCa -3'
miRNA:   3'- ugauGGUGGC-GGUgGUGGUCGCU--------------UGG- -5'
12648 5' -56.8 NC_003345.1 + 19750 0.68 0.596834
Target:  5'- cGCUACCuugaGCCG-CGCCAgCGGCGGuuaucugcuggaaACCa -3'
miRNA:   3'- -UGAUGG----UGGCgGUGGUgGUCGCU-------------UGG- -5'
12648 5' -56.8 NC_003345.1 + 21823 0.8 0.11359
Target:  5'- --cACCGCCggaGUCGCCACCgAGCGAGCCg -3'
miRNA:   3'- ugaUGGUGG---CGGUGGUGG-UCGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 24726 0.72 0.400231
Target:  5'- cGCUAUgAuauUCGCCACCGCUGGCGuuCCg -3'
miRNA:   3'- -UGAUGgU---GGCGGUGGUGGUCGCuuGG- -5'
12648 5' -56.8 NC_003345.1 + 26467 0.72 0.374228
Target:  5'- cCU-CCGCCGCUACCACCc-CGGACg -3'
miRNA:   3'- uGAuGGUGGCGGUGGUGGucGCUUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.