miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12648 5' -56.8 NC_003345.1 + 77132 0.69 0.555858
Target:  5'- cACaACgGCC-CCACaCACCAGaUGAACCa -3'
miRNA:   3'- -UGaUGgUGGcGGUG-GUGGUC-GCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 26467 0.72 0.374228
Target:  5'- cCU-CCGCCGCUACCACCc-CGGACg -3'
miRNA:   3'- uGAuGGUGGCGGUGGUGGucGCUUGg -5'
12648 5' -56.8 NC_003345.1 + 50227 0.72 0.382768
Target:  5'- cAUUACCACCGCgACCcCCgaAG-GAGCCg -3'
miRNA:   3'- -UGAUGGUGGCGgUGGuGG--UCgCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 55341 0.72 0.400231
Target:  5'- cGCUcugaACCGCCGCCACCcccuCCGGUguuGGGCa -3'
miRNA:   3'- -UGA----UGGUGGCGGUGGu---GGUCG---CUUGg -5'
12648 5' -56.8 NC_003345.1 + 73415 0.71 0.417284
Target:  5'- cGCUcaGCCACCGCCGCCggguucuGCCgacucgauggAGUGAuACCg -3'
miRNA:   3'- -UGA--UGGUGGCGGUGG-------UGG----------UCGCU-UGG- -5'
12648 5' -56.8 NC_003345.1 + 75286 0.7 0.484703
Target:  5'- ---uUCACCGCC-UCACCAGCagggcuGAACCg -3'
miRNA:   3'- ugauGGUGGCGGuGGUGGUCG------CUUGG- -5'
12648 5' -56.8 NC_003345.1 + 59310 0.7 0.504629
Target:  5'- aGC-ACCGCCGUaauucgCACCGCUacccguggucGGCGGGCCu -3'
miRNA:   3'- -UGaUGGUGGCG------GUGGUGG----------UCGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 50638 0.7 0.504629
Target:  5'- --cACCAUCGCCACCugCguucuuGGCGAGa- -3'
miRNA:   3'- ugaUGGUGGCGGUGGugG------UCGCUUgg -5'
12648 5' -56.8 NC_003345.1 + 62183 0.69 0.545474
Target:  5'- aGCgUACCAgCGUcaacagCACCACCAGCaucaucGAACCc -3'
miRNA:   3'- -UG-AUGGUgGCG------GUGGUGGUCG------CUUGG- -5'
12648 5' -56.8 NC_003345.1 + 61052 0.72 0.374228
Target:  5'- cAUUACCGCCGCCGaCGCUcgGGUGuGCCg -3'
miRNA:   3'- -UGAUGGUGGCGGUgGUGG--UCGCuUGG- -5'
12648 5' -56.8 NC_003345.1 + 55291 0.73 0.341382
Target:  5'- --aGCCACCGUCACCACCGuauGCgucuGAGCUu -3'
miRNA:   3'- ugaUGGUGGCGGUGGUGGU---CG----CUUGG- -5'
12648 5' -56.8 NC_003345.1 + 50699 0.73 0.318147
Target:  5'- ---uCCACCGCCGCCGuuAGaaccaGAACCg -3'
miRNA:   3'- ugauGGUGGCGGUGGUggUCg----CUUGG- -5'
12648 5' -56.8 NC_003345.1 + 50314 0.83 0.081718
Target:  5'- --cACCACCGCCAucuCCGCCAGCGGcuccACCu -3'
miRNA:   3'- ugaUGGUGGCGGU---GGUGGUCGCU----UGG- -5'
12648 5' -56.8 NC_003345.1 + 55786 0.78 0.169709
Target:  5'- --cGCCACCGCCcCCACCAcCGAuaGCCg -3'
miRNA:   3'- ugaUGGUGGCGGuGGUGGUcGCU--UGG- -5'
12648 5' -56.8 NC_003345.1 + 50015 0.78 0.174222
Target:  5'- aGCU-CCACCGCCACCuCCAccGCcgGAGCCg -3'
miRNA:   3'- -UGAuGGUGGCGGUGGuGGU--CG--CUUGG- -5'
12648 5' -56.8 NC_003345.1 + 50262 0.77 0.183572
Target:  5'- cCU-CCACCGCCACCACCGcCGGGgCg -3'
miRNA:   3'- uGAuGGUGGCGGUGGUGGUcGCUUgG- -5'
12648 5' -56.8 NC_003345.1 + 42225 0.77 0.188411
Target:  5'- cCUACC-CCGUCGCCGCCAaCGGGCUg -3'
miRNA:   3'- uGAUGGuGGCGGUGGUGGUcGCUUGG- -5'
12648 5' -56.8 NC_003345.1 + 65240 0.75 0.243224
Target:  5'- cCUGUCACCGCUACCACCcGUGAccuucGCCg -3'
miRNA:   3'- uGAUGGUGGCGGUGGUGGuCGCU-----UGG- -5'
12648 5' -56.8 NC_003345.1 + 72320 0.74 0.289048
Target:  5'- --gGCCACCGCCGCCcggcggcuCCAGCGcguACUu -3'
miRNA:   3'- ugaUGGUGGCGGUGGu-------GGUCGCu--UGG- -5'
12648 5' -56.8 NC_003345.1 + 75615 0.74 0.310671
Target:  5'- aACaGCCuCCGCCGCaaCugCGGCGAGCUg -3'
miRNA:   3'- -UGaUGGuGGCGGUG--GugGUCGCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.