miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12657 5' -57.2 NC_003345.1 + 30342 0.66 0.700778
Target:  5'- aGcCCGACC--ACCGAGGgagauuCCGGUGGAg -3'
miRNA:   3'- aCcGGCUGGuuUGGCUCC------GGCUACUU- -5'
12657 5' -57.2 NC_003345.1 + 40435 0.66 0.690221
Target:  5'- gUGGUagucuuCGACCAuGuuGAGGCCGAa--- -3'
miRNA:   3'- -ACCG------GCUGGUuUggCUCCGGCUacuu -5'
12657 5' -57.2 NC_003345.1 + 916 0.66 0.679612
Target:  5'- cGGUCGGCCcguAACaGGGGCCGGa--- -3'
miRNA:   3'- aCCGGCUGGu--UUGgCUCCGGCUacuu -5'
12657 5' -57.2 NC_003345.1 + 61043 0.66 0.679612
Target:  5'- aGcGCCGACCAuuACCGccGCCGAc--- -3'
miRNA:   3'- aC-CGGCUGGUu-UGGCucCGGCUacuu -5'
12657 5' -57.2 NC_003345.1 + 38561 0.66 0.679612
Target:  5'- aUGGaaGACgGAacccugcucuGCCGAGGUCGcgGAAa -3'
miRNA:   3'- -ACCggCUGgUU----------UGGCUCCGGCuaCUU- -5'
12657 5' -57.2 NC_003345.1 + 75425 0.66 0.668959
Target:  5'- cGGuuccCCGGCguAACCGGGGCCGc-GAGg -3'
miRNA:   3'- aCC----GGCUGguUUGGCUCCGGCuaCUU- -5'
12657 5' -57.2 NC_003345.1 + 33073 0.66 0.668959
Target:  5'- gGGCCGACCGccAACCcgccgGAGGaaaCCGA-GAAg -3'
miRNA:   3'- aCCGGCUGGU--UUGG-----CUCC---GGCUaCUU- -5'
12657 5' -57.2 NC_003345.1 + 282 0.67 0.626118
Target:  5'- gGGCCGACCGGcCCGAgagacgGGCaGggGAGa -3'
miRNA:   3'- aCCGGCUGGUUuGGCU------CCGgCuaCUU- -5'
12657 5' -57.2 NC_003345.1 + 77569 0.67 0.626118
Target:  5'- gGGCCGACCGGcCCGAgagacgGGCaGggGAGa -3'
miRNA:   3'- aCCGGCUGGUUuGGCU------CCGgCuaCUU- -5'
12657 5' -57.2 NC_003345.1 + 42853 0.67 0.58974
Target:  5'- aGGCCGACgAuguggggugucguACaGAGGUCGGUGAGg -3'
miRNA:   3'- aCCGGCUGgUu------------UGgCUCCGGCUACUU- -5'
12657 5' -57.2 NC_003345.1 + 35840 0.68 0.583352
Target:  5'- -uGCCcACgGAaGCCGGGGUCGAUGAAg -3'
miRNA:   3'- acCGGcUGgUU-UGGCUCCGGCUACUU- -5'
12657 5' -57.2 NC_003345.1 + 77000 0.68 0.562168
Target:  5'- cUGGUCGAgCCAAuCCG-GGUCGAUGu- -3'
miRNA:   3'- -ACCGGCU-GGUUuGGCuCCGGCUACuu -5'
12657 5' -57.2 NC_003345.1 + 63418 0.68 0.541197
Target:  5'- -cGCUGGCCGA---GGGGCCGGUGAGc -3'
miRNA:   3'- acCGGCUGGUUuggCUCCGGCUACUU- -5'
12657 5' -57.2 NC_003345.1 + 682 0.72 0.364275
Target:  5'- gGGCCGACCGccccgguuaacaucaAACCGGGGCgGGc--- -3'
miRNA:   3'- aCCGGCUGGU---------------UUGGCUCCGgCUacuu -5'
12657 5' -57.2 NC_003345.1 + 23649 0.73 0.305857
Target:  5'- aGGUCGAagaagcGACCGAGGCCGAgGAAg -3'
miRNA:   3'- aCCGGCUggu---UUGGCUCCGGCUaCUU- -5'
12657 5' -57.2 NC_003345.1 + 32528 0.75 0.210019
Target:  5'- aGGCCguGACCG--UCGAGGUCGAUGAAg -3'
miRNA:   3'- aCCGG--CUGGUuuGGCUCCGGCUACUU- -5'
12657 5' -57.2 NC_003345.1 + 831 0.77 0.170307
Target:  5'- gGGCCGACCGgggagacggAACCGGGGCgGAauUGAc -3'
miRNA:   3'- aCCGGCUGGU---------UUGGCUCCGgCU--ACUu -5'
12657 5' -57.2 NC_003345.1 + 60158 1.06 0.001519
Target:  5'- gUGGCCGACCAAACCGAGGCCGAUGAAc -3'
miRNA:   3'- -ACCGGCUGGUUUGGCUCCGGCUACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.