miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12671 3' -53.4 NC_003345.1 + 4614 0.66 0.902695
Target:  5'- cCGGAGUCGGUG-GAGguaau-CUCCGa -3'
miRNA:   3'- -GCCUCAGCUACuCUCagugcuGAGGU- -5'
12671 3' -53.4 NC_003345.1 + 20413 0.66 0.881585
Target:  5'- uGGAGUguUGAUGGGGuUCACGacgugguucgGCUCCGc -3'
miRNA:   3'- gCCUCA--GCUACUCUcAGUGC----------UGAGGU- -5'
12671 3' -53.4 NC_003345.1 + 46085 0.66 0.881585
Target:  5'- aGcGAGcCGGUGAGAGgccCACGuccccCUCCGg -3'
miRNA:   3'- gC-CUCaGCUACUCUCa--GUGCu----GAGGU- -5'
12671 3' -53.4 NC_003345.1 + 66875 0.67 0.866272
Target:  5'- uGGAGUCG-UGAcucUCAuCGACUCCGa -3'
miRNA:   3'- gCCUCAGCuACUcucAGU-GCUGAGGU- -5'
12671 3' -53.4 NC_003345.1 + 54081 0.67 0.832894
Target:  5'- uGGAaUCGA-GAGuGUCACGAaUCCGa -3'
miRNA:   3'- gCCUcAGCUaCUCuCAGUGCUgAGGU- -5'
12671 3' -53.4 NC_003345.1 + 23259 0.68 0.82402
Target:  5'- gGGAGU-GAUuagGAGAGUCGcCGuCUCCGc -3'
miRNA:   3'- gCCUCAgCUA---CUCUCAGU-GCuGAGGU- -5'
12671 3' -53.4 NC_003345.1 + 56557 0.68 0.805701
Target:  5'- uCGGAGcUUGGUGGagcuucGAGUCACGACcagCUAa -3'
miRNA:   3'- -GCCUC-AGCUACU------CUCAGUGCUGa--GGU- -5'
12671 3' -53.4 NC_003345.1 + 65082 0.69 0.75702
Target:  5'- uCGGGGUCGAUGAuaauGUCGUGACccuccUCCAa -3'
miRNA:   3'- -GCCUCAGCUACUcu--CAGUGCUG-----AGGU- -5'
12671 3' -53.4 NC_003345.1 + 8273 0.7 0.673314
Target:  5'- gGGAGUCGGUGGGAGguaAgGugUUCu -3'
miRNA:   3'- gCCUCAGCUACUCUCag-UgCugAGGu -5'
12671 3' -53.4 NC_003345.1 + 65490 0.72 0.560491
Target:  5'- cCGGAGUCGGagauuccUGAGAGUCugacaacggacuuCGACUCgGa -3'
miRNA:   3'- -GCCUCAGCU-------ACUCUCAGu------------GCUGAGgU- -5'
12671 3' -53.4 NC_003345.1 + 66773 1.09 0.002648
Target:  5'- uCGGAGUCGAUGAGAGUCACGACUCCAa -3'
miRNA:   3'- -GCCUCAGCUACUCUCAGUGCUGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.