miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12678 3' -52.4 NC_003345.1 + 63354 0.69 0.766133
Target:  5'- aGGCGAGAGUgGagaGGUCu---UCGCCc -3'
miRNA:   3'- aUCGCUCUCAgCg--UCAGcauuAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 45934 0.7 0.745582
Target:  5'- gAGCGAuAGUCGUgauGUUGUGGUUGCg -3'
miRNA:   3'- aUCGCUcUCAGCGu--CAGCAUUAGCGg -5'
12678 3' -52.4 NC_003345.1 + 10260 0.7 0.745582
Target:  5'- ---aGGGAGUagaaGUAGUCGUAGUCGgCu -3'
miRNA:   3'- aucgCUCUCAg---CGUCAGCAUUAGCgG- -5'
12678 3' -52.4 NC_003345.1 + 41676 0.7 0.703199
Target:  5'- aAGCGGGAGggcCGUAGUag-AAUCGUCg -3'
miRNA:   3'- aUCGCUCUCa--GCGUCAgcaUUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 15328 0.7 0.703199
Target:  5'- uUGGUGAG-GUCGgGGccgaCGUGGUUGCCg -3'
miRNA:   3'- -AUCGCUCuCAGCgUCa---GCAUUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 49487 0.71 0.692403
Target:  5'- gGGCcgucgauAGAGUCGuCAGUCG-AGUCGUCa -3'
miRNA:   3'- aUCGc------UCUCAGC-GUCAGCaUUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 47301 0.71 0.670647
Target:  5'- gAGCGGGGGUgGC-GUCGgguaCGCCu -3'
miRNA:   3'- aUCGCUCUCAgCGuCAGCauuaGCGG- -5'
12678 3' -52.4 NC_003345.1 + 39325 0.71 0.648747
Target:  5'- cGGUGAGAGaaucccgaauuUCGuUAGUCGUGuaccacccGUCGCCg -3'
miRNA:   3'- aUCGCUCUC-----------AGC-GUCAGCAU--------UAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 19940 0.73 0.550543
Target:  5'- -cGUGGuAGUCGCGGUCGUcGUCGUUa -3'
miRNA:   3'- auCGCUcUCAGCGUCAGCAuUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 46890 0.73 0.550543
Target:  5'- cGGCGAGGG-CGCGGUCGUGgaggagaaccuGUgGCg -3'
miRNA:   3'- aUCGCUCUCaGCGUCAGCAU-----------UAgCGg -5'
12678 3' -52.4 NC_003345.1 + 20466 0.73 0.550543
Target:  5'- gGGUucGAGAGUCGCu-UCGaGGUCGCCg -3'
miRNA:   3'- aUCG--CUCUCAGCGucAGCaUUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 71145 1.12 0.001978
Target:  5'- gUAGCGAGAGUCGCAGUCGUAAUCGCCg -3'
miRNA:   3'- -AUCGCUCUCAGCGUCAGCAUUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.