miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1268 3' -59.3 NC_001317.1 + 7266 0.66 0.334244
Target:  5'- gAGCUGCCCCaCAaUGCaGCg--CGGCu -3'
miRNA:   3'- aUCGGCGGGG-GUgACGcUGuuaGCCG- -5'
1268 3' -59.3 NC_001317.1 + 16981 0.66 0.342622
Target:  5'- aUGGCCGCagCaggCGCUGCGG-GGUCGGUa -3'
miRNA:   3'- -AUCGGCGg-Gg--GUGACGCUgUUAGCCG- -5'
1268 3' -59.3 NC_001317.1 + 17774 0.66 0.334244
Target:  5'- aAGCCGCCUCaa--GCGGCAAacuugacCGGCu -3'
miRNA:   3'- aUCGGCGGGGgugaCGCUGUUa------GCCG- -5'
1268 3' -59.3 NC_001317.1 + 18262 1.09 0.000169
Target:  5'- aUAGCCGCCCCCACUGCGACAAUCGGCc -3'
miRNA:   3'- -AUCGGCGGGGGUGACGCUGUUAGCCG- -5'
1268 3' -59.3 NC_001317.1 + 19913 0.68 0.238998
Target:  5'- -cGUCG-CCCCAUUGCGGucagcCAGUCGGg -3'
miRNA:   3'- auCGGCgGGGGUGACGCU-----GUUAGCCg -5'
1268 3' -59.3 NC_001317.1 + 20825 0.7 0.167526
Target:  5'- aUGGCCGCUgaCCAC--CGACAGUCGGg -3'
miRNA:   3'- -AUCGGCGGg-GGUGacGCUGUUAGCCg -5'
1268 3' -59.3 NC_001317.1 + 23205 0.69 0.197783
Target:  5'- --aCCGCCUaCCGCUG-GACAAcCGGCg -3'
miRNA:   3'- aucGGCGGG-GGUGACgCUGUUaGCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.