miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12680 5' -53.3 NC_003345.1 + 59303 0.66 0.865957
Target:  5'- -----cCGAGCCAGCaCC-GCCGuaauUCGCa -3'
miRNA:   3'- uuagaaGUUCGGUCG-GGuUGGC----AGCG- -5'
12680 5' -53.3 NC_003345.1 + 2723 0.66 0.84931
Target:  5'- cGUCUUCGGuGUCAcuaccGCCgucGCCGUCGCu -3'
miRNA:   3'- uUAGAAGUU-CGGU-----CGGgu-UGGCAGCG- -5'
12680 5' -53.3 NC_003345.1 + 44481 0.66 0.840638
Target:  5'- -cUUUUCGgauAGCCgaaGGCauaCCAAUCGUCGCg -3'
miRNA:   3'- uuAGAAGU---UCGG---UCG---GGUUGGCAGCG- -5'
12680 5' -53.3 NC_003345.1 + 19674 0.67 0.831747
Target:  5'- cGUCUccUCGuGUuuCAGCUCAGCCuGUCGCu -3'
miRNA:   3'- uUAGA--AGUuCG--GUCGGGUUGG-CAGCG- -5'
12680 5' -53.3 NC_003345.1 + 34194 0.67 0.813339
Target:  5'- uAGUCUUCAAGCUcuuuuccaAGCCCA-CCGg--- -3'
miRNA:   3'- -UUAGAAGUUCGG--------UCGGGUuGGCagcg -5'
12680 5' -53.3 NC_003345.1 + 16764 0.67 0.803843
Target:  5'- -cUCggCAAGCCAGCUUGucUCGUUGCu -3'
miRNA:   3'- uuAGaaGUUCGGUCGGGUu-GGCAGCG- -5'
12680 5' -53.3 NC_003345.1 + 49815 0.69 0.711574
Target:  5'- cAUCUacaaUCGGGUCAaCCgGGCCGUCGUa -3'
miRNA:   3'- uUAGA----AGUUCGGUcGGgUUGGCAGCG- -5'
12680 5' -53.3 NC_003345.1 + 70867 0.7 0.65702
Target:  5'- cGGUCUUCGGGCgGGCCgGguuCCaUCGCu -3'
miRNA:   3'- -UUAGAAGUUCGgUCGGgUu--GGcAGCG- -5'
12680 5' -53.3 NC_003345.1 + 14811 0.7 0.633856
Target:  5'- uAGUCUUCuuccgaccgagguAGGCUAuGUCCGgcuuGCCGUCGCg -3'
miRNA:   3'- -UUAGAAG-------------UUCGGU-CGGGU----UGGCAGCG- -5'
12680 5' -53.3 NC_003345.1 + 73615 0.71 0.601874
Target:  5'- uGGUCUUCGAGCaugaaGGCCCG--CGUCGg -3'
miRNA:   3'- -UUAGAAGUUCGg----UCGGGUugGCAGCg -5'
12680 5' -53.3 NC_003345.1 + 39660 0.71 0.569021
Target:  5'- -uUCUgcgUGAGCCAuagcucGuCCCGACCGUCGUa -3'
miRNA:   3'- uuAGAa--GUUCGGU------C-GGGUUGGCAGCG- -5'
12680 5' -53.3 NC_003345.1 + 51674 0.73 0.463927
Target:  5'- uGGUCUUCGAGCCAaaCCAgauguucgagauACCaGUCGCa -3'
miRNA:   3'- -UUAGAAGUUCGGUcgGGU------------UGG-CAGCG- -5'
12680 5' -53.3 NC_003345.1 + 65826 0.75 0.387627
Target:  5'- --gCUUCGA-CCAGCUC-ACCGUCGCu -3'
miRNA:   3'- uuaGAAGUUcGGUCGGGuUGGCAGCG- -5'
12680 5' -53.3 NC_003345.1 + 72960 1.1 0.001637
Target:  5'- aAAUCUUCAAGCCAGCCCAACCGUCGCg -3'
miRNA:   3'- -UUAGAAGUUCGGUCGGGUUGGCAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.