Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12681 | 3' | -51.3 | NC_003345.1 | + | 9755 | 0.7 | 0.84852 |
Target: 5'- cGUUGUUCACGGCgaCUCGUGG-GCUGa -3' miRNA: 3'- cCAGCAAGUGCUG--GAGCACUaUGGCc -5' |
|||||||
12681 | 3' | -51.3 | NC_003345.1 | + | 14028 | 0.71 | 0.804188 |
Target: 5'- cGUgGUUCACGGugacgaGUGAUGCCGGa -3' miRNA: 3'- cCAgCAAGUGCUggag--CACUAUGGCC- -5' |
|||||||
12681 | 3' | -51.3 | NC_003345.1 | + | 42799 | 0.72 | 0.775451 |
Target: 5'- gGGUCGUcguuguaucgcuUCACGuCCUCGauGUACCGa -3' miRNA: 3'- -CCAGCA------------AGUGCuGGAGCacUAUGGCc -5' |
|||||||
12681 | 3' | -51.3 | NC_003345.1 | + | 26791 | 0.77 | 0.502605 |
Target: 5'- gGGUCGUUCACuAUCUCGUGG--UCGGu -3' miRNA: 3'- -CCAGCAAGUGcUGGAGCACUauGGCC- -5' |
|||||||
12681 | 3' | -51.3 | NC_003345.1 | + | 11001 | 0.81 | 0.321594 |
Target: 5'- -uUCGUUugacgacCGCGACCUCGUGAUugUGGa -3' miRNA: 3'- ccAGCAA-------GUGCUGGAGCACUAugGCC- -5' |
|||||||
12681 | 3' | -51.3 | NC_003345.1 | + | 73478 | 1.15 | 0.002399 |
Target: 5'- cGGUCGUUCACGACCUCGUGAUACCGGa -3' miRNA: 3'- -CCAGCAAGUGCUGGAGCACUAUGGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home