Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12682 | 3' | -45.8 | NC_003345.1 | + | 74020 | 1.15 | 0.006531 |
Target: 5'- aAGAACGCCAUCUCGUCAAUAAAGACCg -3' miRNA: 3'- -UCUUGCGGUAGAGCAGUUAUUUCUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 21334 | 0.8 | 0.625913 |
Target: 5'- cGGAGCGCCGUUgUCGUCGGUGgcGAaCCa -3' miRNA: 3'- -UCUUGCGGUAG-AGCAGUUAUuuCU-GG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 55490 | 0.76 | 0.811568 |
Target: 5'- cGGAugGCUccgGUCUaaaCGUCGGUGAAGACg -3' miRNA: 3'- -UCUugCGG---UAGA---GCAGUUAUUUCUGg -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 45627 | 0.74 | 0.897553 |
Target: 5'- cGGAUGCCuaccagCUUGcccUCGAUGAAGGCCg -3' miRNA: 3'- uCUUGCGGua----GAGC---AGUUAUUUCUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 54674 | 0.74 | 0.91803 |
Target: 5'- uGAugGUCGUCUCGUCAAauuc-ACCg -3' miRNA: 3'- uCUugCGGUAGAGCAGUUauuucUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 61380 | 0.72 | 0.955413 |
Target: 5'- cGAGaaCCAUCUCGUCuuc-AAGACCc -3' miRNA: 3'- uCUUgcGGUAGAGCAGuuauUUCUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 24648 | 0.71 | 0.97359 |
Target: 5'- cGAGCGCCGUggUUCGgug--AAAGACCc -3' miRNA: 3'- uCUUGCGGUA--GAGCaguuaUUUCUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 67396 | 0.71 | 0.97359 |
Target: 5'- aAGuACGCCugauUCUCGUUAAUAAucuGGAgCg -3' miRNA: 3'- -UCuUGCGGu---AGAGCAGUUAUU---UCUgG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 14238 | 0.71 | 0.976457 |
Target: 5'- cAGAAcCGCC-UCUUGacuUCGAUGAAGugCu -3' miRNA: 3'- -UCUU-GCGGuAGAGC---AGUUAUUUCugG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 70528 | 0.7 | 0.983687 |
Target: 5'- uGAACGCCGcUgUCGaUGAUGAGGACg -3' miRNA: 3'- uCUUGCGGU-AgAGCaGUUAUUUCUGg -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 39504 | 0.7 | 0.983895 |
Target: 5'- gGGAGCGCCGUCgaacaaaucugguaGUCAAaGAGcuucGACCg -3' miRNA: 3'- -UCUUGCGGUAGag------------CAGUUaUUU----CUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 24173 | 0.7 | 0.985678 |
Target: 5'- gGGAACGUCGaa--GUCGAUGAAGAUa -3' miRNA: 3'- -UCUUGCGGUagagCAGUUAUUUCUGg -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 21831 | 0.7 | 0.985678 |
Target: 5'- gAGAACGUCGaacagCUCGUCGcugGUGAAGucggugacGCCg -3' miRNA: 3'- -UCUUGCGGUa----GAGCAGU---UAUUUC--------UGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 74157 | 0.69 | 0.992993 |
Target: 5'- cGGACuCCG-CUCGU-GGUGAAGACCc -3' miRNA: 3'- uCUUGcGGUaGAGCAgUUAUUUCUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 51246 | 0.69 | 0.992993 |
Target: 5'- uGAACGCgagCGUCcaaGUCGGUGAcGACCu -3' miRNA: 3'- uCUUGCG---GUAGag-CAGUUAUUuCUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 22188 | 0.68 | 0.99401 |
Target: 5'- cGGGGuCGCCGuUCUCGUC-GUGGGGAa- -3' miRNA: 3'- -UCUU-GCGGU-AGAGCAGuUAUUUCUgg -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 10933 | 0.68 | 0.99401 |
Target: 5'- cAGGACucgcccuCCGUCUCGUCGGggAGGGAgCa -3' miRNA: 3'- -UCUUGc------GGUAGAGCAGUUa-UUUCUgG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 14225 | 0.68 | 0.99401 |
Target: 5'- uGAACGUCGUgUCG-CAAUcgGGGCa -3' miRNA: 3'- uCUUGCGGUAgAGCaGUUAuuUCUGg -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 23247 | 0.68 | 0.994905 |
Target: 5'- gAGAGuCGCCGUCUCcgcUCGGUcggGGAGAgCg -3' miRNA: 3'- -UCUU-GCGGUAGAGc--AGUUA---UUUCUgG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 26308 | 0.68 | 0.99637 |
Target: 5'- uGAACGUCGUagagccaCGUCAGcgGGAGACUg -3' miRNA: 3'- uCUUGCGGUAga-----GCAGUUa-UUUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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