miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12682 3' -45.8 NC_003345.1 + 74020 1.15 0.006531
Target:  5'- aAGAACGCCAUCUCGUCAAUAAAGACCg -3'
miRNA:   3'- -UCUUGCGGUAGAGCAGUUAUUUCUGG- -5'
12682 3' -45.8 NC_003345.1 + 71268 0.67 0.99883
Target:  5'- uGAGCGCgGUuguuucgagaacgCUCGUCGGUucGGGCg -3'
miRNA:   3'- uCUUGCGgUA-------------GAGCAGUUAuuUCUGg -5'
12682 3' -45.8 NC_003345.1 + 45036 0.67 0.998855
Target:  5'- uGGAACaGCuCAUCgagUCGUUugaaGAAGACCg -3'
miRNA:   3'- -UCUUG-CG-GUAG---AGCAGuua-UUUCUGG- -5'
12682 3' -45.8 NC_003345.1 + 60491 0.67 0.998855
Target:  5'- gAGAAgGCCGUCaccaagCGUCuccgAAAGAgCa -3'
miRNA:   3'- -UCUUgCGGUAGa-----GCAGuua-UUUCUgG- -5'
12682 3' -45.8 NC_003345.1 + 75341 0.67 0.998855
Target:  5'- gGGAAcCGCaCAUUg-GUCGGUcAAGACCu -3'
miRNA:   3'- -UCUU-GCG-GUAGagCAGUUAuUUCUGG- -5'
12682 3' -45.8 NC_003345.1 + 2431 0.66 0.999076
Target:  5'- gGGAAC-CCA--UCGUCccaguaguggcaAGUAAAGGCCg -3'
miRNA:   3'- -UCUUGcGGUagAGCAG------------UUAUUUCUGG- -5'
12682 3' -45.8 NC_003345.1 + 66577 0.66 0.999259
Target:  5'- -cGACGCCGUaucCUCGUCAAgcccGuCCg -3'
miRNA:   3'- ucUUGCGGUA---GAGCAGUUauuuCuGG- -5'
12682 3' -45.8 NC_003345.1 + 21057 0.66 0.99941
Target:  5'- --uACGCCuucAUCUCGuUCAAgauuGGCCg -3'
miRNA:   3'- ucuUGCGG---UAGAGC-AGUUauuuCUGG- -5'
12682 3' -45.8 NC_003345.1 + 48978 0.66 0.999533
Target:  5'- aGGAACGUUcUCUCGUCuaAAUAAucucGugCg -3'
miRNA:   3'- -UCUUGCGGuAGAGCAG--UUAUUu---CugG- -5'
12682 3' -45.8 NC_003345.1 + 11564 0.67 0.998562
Target:  5'- cGAACaCCAUCgUCGgcUCGAUGAguggggacggcgaAGACCg -3'
miRNA:   3'- uCUUGcGGUAG-AGC--AGUUAUU-------------UCUGG- -5'
12682 3' -45.8 NC_003345.1 + 11204 0.67 0.997906
Target:  5'- cGAACuUCGUUgaaCGUCAcgAUGAAGACCc -3'
miRNA:   3'- uCUUGcGGUAGa--GCAGU--UAUUUCUGG- -5'
12682 3' -45.8 NC_003345.1 + 72303 0.67 0.997906
Target:  5'- --uGCGUCGUCgUCGUCG----GGGCCa -3'
miRNA:   3'- ucuUGCGGUAG-AGCAGUuauuUCUGG- -5'
12682 3' -45.8 NC_003345.1 + 54674 0.74 0.91803
Target:  5'- uGAugGUCGUCUCGUCAAauuc-ACCg -3'
miRNA:   3'- uCUugCGGUAGAGCAGUUauuucUGG- -5'
12682 3' -45.8 NC_003345.1 + 61380 0.72 0.955413
Target:  5'- cGAGaaCCAUCUCGUCuuc-AAGACCc -3'
miRNA:   3'- uCUUgcGGUAGAGCAGuuauUUCUGG- -5'
12682 3' -45.8 NC_003345.1 + 24648 0.71 0.97359
Target:  5'- cGAGCGCCGUggUUCGgug--AAAGACCc -3'
miRNA:   3'- uCUUGCGGUA--GAGCaguuaUUUCUGG- -5'
12682 3' -45.8 NC_003345.1 + 67396 0.71 0.97359
Target:  5'- aAGuACGCCugauUCUCGUUAAUAAucuGGAgCg -3'
miRNA:   3'- -UCuUGCGGu---AGAGCAGUUAUU---UCUgG- -5'
12682 3' -45.8 NC_003345.1 + 14238 0.71 0.976457
Target:  5'- cAGAAcCGCC-UCUUGacuUCGAUGAAGugCu -3'
miRNA:   3'- -UCUU-GCGGuAGAGC---AGUUAUUUCugG- -5'
12682 3' -45.8 NC_003345.1 + 21831 0.7 0.985678
Target:  5'- gAGAACGUCGaacagCUCGUCGcugGUGAAGucggugacGCCg -3'
miRNA:   3'- -UCUUGCGGUa----GAGCAGU---UAUUUC--------UGG- -5'
12682 3' -45.8 NC_003345.1 + 63273 0.68 0.99637
Target:  5'- cGAGCGUagcCcCGUCGaugGUAAAGACCa -3'
miRNA:   3'- uCUUGCGguaGaGCAGU---UAUUUCUGG- -5'
12682 3' -45.8 NC_003345.1 + 31336 0.67 0.99747
Target:  5'- cGAACGuCCAgCUUGUCGcaccgauaAUGAAGuCCg -3'
miRNA:   3'- uCUUGC-GGUaGAGCAGU--------UAUUUCuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.