Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12683 | 3' | -61.8 | NC_003345.1 | + | 75304 | 1.13 | 0.000229 |
Target: 5'- gGGCUGAACCGCCGACCUCGCGGCCCCg -3' miRNA: 3'- -CCGACUUGGCGGCUGGAGCGCCGGGG- -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 72423 | 0.78 | 0.088683 |
Target: 5'- cGCUgGAGCCGCCGGgCggcgGUGGCCCCg -3' miRNA: 3'- cCGA-CUUGGCGGCUgGag--CGCCGGGG- -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 25680 | 0.75 | 0.14133 |
Target: 5'- aGCUGAACUucaacgaGCagguaGACCUCGCGGCUCa -3' miRNA: 3'- cCGACUUGG-------CGg----CUGGAGCGCCGGGg -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 45349 | 0.75 | 0.145363 |
Target: 5'- aGCUGAACCGCCGccuUCUCGCucaccucGCCCUu -3' miRNA: 3'- cCGACUUGGCGGCu--GGAGCGc------CGGGG- -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 25337 | 0.75 | 0.145363 |
Target: 5'- cGGCUGAacaagACCGCUGGuucucUCUCGCGGCgUCu -3' miRNA: 3'- -CCGACU-----UGGCGGCU-----GGAGCGCCGgGG- -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 73723 | 0.73 | 0.201533 |
Target: 5'- gGGCgcgGAGCCGCUGACgacuaCUCcuaCGGCCUCa -3' miRNA: 3'- -CCGa--CUUGGCGGCUG-----GAGc--GCCGGGG- -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 72319 | 0.71 | 0.250753 |
Target: 5'- gGGCc--ACCGCCGcCCg-GCGGCUCCa -3' miRNA: 3'- -CCGacuUGGCGGCuGGagCGCCGGGG- -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 72139 | 0.71 | 0.269238 |
Target: 5'- -aUUGAGCCGgauUCGAUgCUCGCGGCUCCc -3' miRNA: 3'- ccGACUUGGC---GGCUG-GAGCGCCGGGG- -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 61248 | 0.7 | 0.282162 |
Target: 5'- -cUUGAgGCCGaaGAUuacgCUCGCGGCCCCa -3' miRNA: 3'- ccGACU-UGGCggCUG----GAGCGCCGGGG- -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 52333 | 0.7 | 0.282162 |
Target: 5'- gGGCUacgacGAGaCGCaCGACUUCaGCGGCUCCg -3' miRNA: 3'- -CCGA-----CUUgGCG-GCUGGAG-CGCCGGGG- -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 48750 | 0.7 | 0.295572 |
Target: 5'- uGCUG-ACUGaCgCGACCUCcCGGCCCa -3' miRNA: 3'- cCGACuUGGC-G-GCUGGAGcGCCGGGg -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 21483 | 0.69 | 0.349467 |
Target: 5'- uGGCUGAACgaggaCGCucucgaacuccgugaCGACCUCGaaGGCCgCCg -3' miRNA: 3'- -CCGACUUG-----GCG---------------GCUGGAGCg-CCGG-GG- -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 24132 | 0.69 | 0.354131 |
Target: 5'- uGUUGuccCCGUCGuCCgUGUGGCCCCg -3' miRNA: 3'- cCGACuu-GGCGGCuGGaGCGCCGGGG- -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 51869 | 0.68 | 0.386337 |
Target: 5'- aGGUUG-ACC-CCGACUUCGgGGCUggaaCCg -3' miRNA: 3'- -CCGACuUGGcGGCUGGAGCgCCGG----GG- -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 70173 | 0.68 | 0.394685 |
Target: 5'- -cCUGAACCuCCGAga-CGCGGCCCUc -3' miRNA: 3'- ccGACUUGGcGGCUggaGCGCCGGGG- -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 33713 | 0.68 | 0.411727 |
Target: 5'- aGCUGAACaacgagguguaCGuuGACCUCGCcGCCg- -3' miRNA: 3'- cCGACUUG-----------GCggCUGGAGCGcCGGgg -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 42515 | 0.67 | 0.426565 |
Target: 5'- cGGCUGAAucggucgcgggUCGCCggacugauuuuuguGACCUCGCccGUCCCc -3' miRNA: 3'- -CCGACUU-----------GGCGG--------------CUGGAGCGc-CGGGG- -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 75640 | 0.67 | 0.429217 |
Target: 5'- aGCUGuuCCGUCG-CgCUCGCGGUCUUc -3' miRNA: 3'- cCGACuuGGCGGCuG-GAGCGCCGGGG- -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 24389 | 0.67 | 0.456251 |
Target: 5'- gGGUUGAcguugACuCGuCCGACCUCGCucGUCUCg -3' miRNA: 3'- -CCGACU-----UG-GC-GGCUGGAGCGc-CGGGG- -5' |
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12683 | 3' | -61.8 | NC_003345.1 | + | 46128 | 0.66 | 0.474774 |
Target: 5'- cGCaUGAcgcACCGCgCGACCUCGUagGaGUCCUg -3' miRNA: 3'- cCG-ACU---UGGCG-GCUGGAGCG--C-CGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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