miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12702 3' -50.4 NC_003349.1 + 116630 0.76 0.675525
Target:  5'- cAGCAacguuguuACCGAUcaGC-GCCGAAAAUGUGCg -3'
miRNA:   3'- -UCGU--------UGGCUG--CGaUGGCUUUUGCACG- -5'
12702 3' -50.4 NC_003349.1 + 76258 0.66 0.994749
Target:  5'- cGUAACCGucccuaggauuACGUuuaUACaUGAGAAUGUGCg -3'
miRNA:   3'- uCGUUGGC-----------UGCG---AUG-GCUUUUGCACG- -5'
12702 3' -50.4 NC_003349.1 + 58887 0.66 0.993897
Target:  5'- cGGCGugacacccGCCGAuguuguCGUUGCCGGu--UGUGCg -3'
miRNA:   3'- -UCGU--------UGGCU------GCGAUGGCUuuuGCACG- -5'
12702 3' -50.4 NC_003349.1 + 51544 0.66 0.990532
Target:  5'- uGGCAACgGACGCU-CCGGugggaaucgccauGGGuaugaacgcCGUGCa -3'
miRNA:   3'- -UCGUUGgCUGCGAuGGCU-------------UUU---------GCACG- -5'
12702 3' -50.4 NC_003349.1 + 94111 0.67 0.989322
Target:  5'- -uCGACCGuuuaGCGUgACCGAuuguGAAUGUGCu -3'
miRNA:   3'- ucGUUGGC----UGCGaUGGCU----UUUGCACG- -5'
12702 3' -50.4 NC_003349.1 + 113677 0.67 0.987839
Target:  5'- cGCAGCCGuacuUGUcACCGAcGACGccGCa -3'
miRNA:   3'- uCGUUGGCu---GCGaUGGCUuUUGCa-CG- -5'
12702 3' -50.4 NC_003349.1 + 43084 0.67 0.982429
Target:  5'- uGGCAuCUGcgcGCGCUACCc--AACGUGUa -3'
miRNA:   3'- -UCGUuGGC---UGCGAUGGcuuUUGCACG- -5'
12702 3' -50.4 NC_003349.1 + 51486 0.67 0.982012
Target:  5'- cGCGACUGGaucaauucggaccUGCUGCCGAAgcuuugcGACGaugGCa -3'
miRNA:   3'- uCGUUGGCU-------------GCGAUGGCUU-------UUGCa--CG- -5'
12702 3' -50.4 NC_003349.1 + 51608 0.68 0.97768
Target:  5'- cGGC-GCCGACGC-ACCGugGAUGaaggacuUGCa -3'
miRNA:   3'- -UCGuUGGCUGCGaUGGCuuUUGC-------ACG- -5'
12702 3' -50.4 NC_003349.1 + 104104 0.71 0.908886
Target:  5'- uGCGACUG-CGaaACCGGuuACGUGCc -3'
miRNA:   3'- uCGUUGGCuGCgaUGGCUuuUGCACG- -5'
12702 3' -50.4 NC_003349.1 + 40384 0.7 0.934797
Target:  5'- cAGCGAaauuccguaaaaCGACacaaauauuugaauGCUACCGAuauGGCGUGCa -3'
miRNA:   3'- -UCGUUg-----------GCUG--------------CGAUGGCUu--UUGCACG- -5'
12702 3' -50.4 NC_003349.1 + 16600 0.7 0.937351
Target:  5'- cGGCGguGCgCGACGgUGCCGAAAAUGa-- -3'
miRNA:   3'- -UCGU--UG-GCUGCgAUGGCUUUUGCacg -5'
12702 3' -50.4 NC_003349.1 + 20809 0.69 0.95547
Target:  5'- uGCAAaugauucuucaUGAUGUUGCCGAauaucuuguuguGAACGUGCa -3'
miRNA:   3'- uCGUUg----------GCUGCGAUGGCU------------UUUGCACG- -5'
12702 3' -50.4 NC_003349.1 + 103626 0.69 0.95547
Target:  5'- uGCAauauGCCGAgcCGCUACCGAuucacgaaGUGUa -3'
miRNA:   3'- uCGU----UGGCU--GCGAUGGCUuuug----CACG- -5'
12702 3' -50.4 NC_003349.1 + 113637 0.68 0.971462
Target:  5'- uAGCAACagucgcggacgcaGACGCaGCCGAAGcCGUaGCc -3'
miRNA:   3'- -UCGUUGg------------CUGCGaUGGCUUUuGCA-CG- -5'
12702 3' -50.4 NC_003349.1 + 73661 1.13 0.0052
Target:  5'- gAGCAACCGACGCUACCGAAAACGUGCu -3'
miRNA:   3'- -UCGUUGGCUGCGAUGGCUUUUGCACG- -5'
12702 3' -50.4 NC_003349.1 + 59391 0.68 0.975379
Target:  5'- uGCAaaaGCUugGACGCUACUGAAGAUauuuUGCa -3'
miRNA:   3'- uCGU---UGG--CUGCGAUGGCUUUUGc---ACG- -5'
12702 3' -50.4 NC_003349.1 + 99115 0.68 0.975379
Target:  5'- gAGguGCuCGACGaaACUGAAuuACGUGCc -3'
miRNA:   3'- -UCguUG-GCUGCgaUGGCUUu-UGCACG- -5'
12702 3' -50.4 NC_003349.1 + 128736 0.69 0.963034
Target:  5'- gAGUGAUgGACGCggacgaUGCCGAAGAauUGCa -3'
miRNA:   3'- -UCGUUGgCUGCG------AUGGCUUUUgcACG- -5'
12702 3' -50.4 NC_003349.1 + 99931 0.69 0.962678
Target:  5'- uGGCAACCGAauaCGCUuuucaucACCGAAGcCG-GUa -3'
miRNA:   3'- -UCGUUGGCU---GCGA-------UGGCUUUuGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.