miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12721 5' -46.9 NC_003356.1 + 24991 0.66 0.980167
Target:  5'- gGUGaGCAUUGccaaGCCcCGuGUGACGCu -3'
miRNA:   3'- aCGC-CGUAACaa--CGGuGUuUAUUGCG- -5'
12721 5' -46.9 NC_003356.1 + 12124 0.66 0.977504
Target:  5'- gUGUGGCAgca-UGaCCACuccAGUAugGCg -3'
miRNA:   3'- -ACGCCGUaacaAC-GGUGu--UUAUugCG- -5'
12721 5' -46.9 NC_003356.1 + 16670 0.66 0.971069
Target:  5'- uUGCaGGCGUUGUuugcgcgUGCUGCAGcagaaaaacAUcAGCGCg -3'
miRNA:   3'- -ACG-CCGUAACA-------ACGGUGUU---------UA-UUGCG- -5'
12721 5' -46.9 NC_003356.1 + 35780 0.66 0.967942
Target:  5'- gGCGGCAggGcagUGgCGCGuuAUGGCGUc -3'
miRNA:   3'- aCGCCGUaaCa--ACgGUGUu-UAUUGCG- -5'
12721 5' -46.9 NC_003356.1 + 11697 0.66 0.967942
Target:  5'- aGCGGCGacag-GCCGCAAGauuucUGGCuGCa -3'
miRNA:   3'- aCGCCGUaacaaCGGUGUUU-----AUUG-CG- -5'
12721 5' -46.9 NC_003356.1 + 37197 0.67 0.964194
Target:  5'- gGUGGCAgcccggggauUUG-UGCgCugGGAUGGCGUa -3'
miRNA:   3'- aCGCCGU----------AACaACG-GugUUUAUUGCG- -5'
12721 5' -46.9 NC_003356.1 + 38492 0.67 0.964194
Target:  5'- -cCGGCAacGUcacacGCCAgAAAUAACGCc -3'
miRNA:   3'- acGCCGUaaCAa----CGGUgUUUAUUGCG- -5'
12721 5' -46.9 NC_003356.1 + 37723 0.67 0.963012
Target:  5'- aGCGG-AUUGUauguauucggUGCCACAgaaaaaguuaucccGAUGACGa -3'
miRNA:   3'- aCGCCgUAACA----------ACGGUGU--------------UUAUUGCg -5'
12721 5' -46.9 NC_003356.1 + 34434 0.67 0.96015
Target:  5'- aUGCGGaaucUGUggGCCACAccgcACGCg -3'
miRNA:   3'- -ACGCCgua-ACAa-CGGUGUuuauUGCG- -5'
12721 5' -46.9 NC_003356.1 + 2237 0.67 0.959728
Target:  5'- --aGGCAgcGUUGCgUACAggcuuucAAUAGCGCa -3'
miRNA:   3'- acgCCGUaaCAACG-GUGU-------UUAUUGCG- -5'
12721 5' -46.9 NC_003356.1 + 29789 0.68 0.946162
Target:  5'- uUGCGGCGUcaucUGaUGCagguguGGUGACGCu -3'
miRNA:   3'- -ACGCCGUA----ACaACGgugu--UUAUUGCG- -5'
12721 5' -46.9 NC_003356.1 + 12184 0.68 0.946162
Target:  5'- aGUGGUcaUGcUGCCACAccuccAAUAuGCGCa -3'
miRNA:   3'- aCGCCGuaACaACGGUGU-----UUAU-UGCG- -5'
12721 5' -46.9 NC_003356.1 + 12922 0.68 0.940862
Target:  5'- -cCGGCAUUccuccaGCCGCAGAUAccAUGCg -3'
miRNA:   3'- acGCCGUAAcaa---CGGUGUUUAU--UGCG- -5'
12721 5' -46.9 NC_003356.1 + 5735 0.68 0.92928
Target:  5'- gGCGGU--UGUUaaGCCGCAGGcuuCGCg -3'
miRNA:   3'- aCGCCGuaACAA--CGGUGUUUauuGCG- -5'
12721 5' -46.9 NC_003356.1 + 24559 0.68 0.922996
Target:  5'- cUGCGGCGUcaUGUaGCCAuUAGGUuuUGCc -3'
miRNA:   3'- -ACGCCGUA--ACAaCGGU-GUUUAuuGCG- -5'
12721 5' -46.9 NC_003356.1 + 34363 0.69 0.90944
Target:  5'- cGCGuGCggUGUgGCCcACAGAUucCGCa -3'
miRNA:   3'- aCGC-CGuaACAaCGG-UGUUUAuuGCG- -5'
12721 5' -46.9 NC_003356.1 + 19255 0.7 0.869947
Target:  5'- uUGUGGCAacaaUGCCGCAG---GCGCu -3'
miRNA:   3'- -ACGCCGUaacaACGGUGUUuauUGCG- -5'
12721 5' -46.9 NC_003356.1 + 36510 0.71 0.842667
Target:  5'- uUGUgGGCAUUGUaggucUGCCGCAuuUGcUGCa -3'
miRNA:   3'- -ACG-CCGUAACA-----ACGGUGUuuAUuGCG- -5'
12721 5' -46.9 NC_003356.1 + 11195 0.72 0.770387
Target:  5'- aGCGGCuggcUGUUGCCAgAAaucuucgaaGUGACGa -3'
miRNA:   3'- aCGCCGua--ACAACGGUgUU---------UAUUGCg -5'
12721 5' -46.9 NC_003356.1 + 29508 0.74 0.677928
Target:  5'- gGCGGCAUcGUUGCUgGCAugcccgaucAAUAAUGCa -3'
miRNA:   3'- aCGCCGUAaCAACGG-UGU---------UUAUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.