Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12746 | 5' | -47.4 | NC_003356.1 | + | 28853 | 0.66 | 0.974517 |
Target: 5'- ---cUAUGACGCCguucaugAUGuCCGGAGAGa -3' miRNA: 3'- caguAUGCUGUGGa------UAU-GGCCUUUCg -5' |
|||||||
12746 | 5' | -47.4 | NC_003356.1 | + | 22249 | 0.66 | 0.97138 |
Target: 5'- aGUCGgcagcggcuUAUGACGCCgaaGCaGGGGAGCg -3' miRNA: 3'- -CAGU---------AUGCUGUGGauaUGgCCUUUCG- -5' |
|||||||
12746 | 5' | -47.4 | NC_003356.1 | + | 41138 | 0.66 | 0.967974 |
Target: 5'- -aCAUACGAUACggaauugaCUcUGCCGGuauuGAAGCa -3' miRNA: 3'- caGUAUGCUGUG--------GAuAUGGCC----UUUCG- -5' |
|||||||
12746 | 5' | -47.4 | NC_003356.1 | + | 28675 | 0.66 | 0.967974 |
Target: 5'- aGUUuaagGCGAUcCCUgAUGCCGGAAAacuGCg -3' miRNA: 3'- -CAGua--UGCUGuGGA-UAUGGCCUUU---CG- -5' |
|||||||
12746 | 5' | -47.4 | NC_003356.1 | + | 30389 | 0.66 | 0.967974 |
Target: 5'- uGUCAUgAUGAaucgcuUACCUuucgGUGCCGG-AAGCa -3' miRNA: 3'- -CAGUA-UGCU------GUGGA----UAUGGCCuUUCG- -5' |
|||||||
12746 | 5' | -47.4 | NC_003356.1 | + | 28543 | 0.68 | 0.923965 |
Target: 5'- aGUUAUuacGCGGgGCCa--GCCGGAAAGUc -3' miRNA: 3'- -CAGUA---UGCUgUGGauaUGGCCUUUCG- -5' |
|||||||
12746 | 5' | -47.4 | NC_003356.1 | + | 34250 | 0.7 | 0.879691 |
Target: 5'- -gCAUACguugcagGAUACCUGgcggGCCGGAAccaGGCu -3' miRNA: 3'- caGUAUG-------CUGUGGAUa---UGGCCUU---UCG- -5' |
|||||||
12746 | 5' | -47.4 | NC_003356.1 | + | 37683 | 0.71 | 0.823593 |
Target: 5'- aGUCAgggACcacauccuuccucuGGCACCUGuUGCCGG-AAGCg -3' miRNA: 3'- -CAGUa--UG--------------CUGUGGAU-AUGGCCuUUCG- -5' |
|||||||
12746 | 5' | -47.4 | NC_003356.1 | + | 24306 | 1.14 | 0.002401 |
Target: 5'- uGUCAUACGACACCUAUACCGGAAAGCg -3' miRNA: 3'- -CAGUAUGCUGUGGAUAUGGCCUUUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home