Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12748 | 3' | -48 | NC_003356.1 | + | 36794 | 0.66 | 0.945402 |
Target: 5'- -cGUGGAugGUGGAGGAu-GGUGUUGCUu -3' miRNA: 3'- uuUACCU--CGCUUUUUuuCCGCGACGG- -5' |
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12748 | 3' | -48 | NC_003356.1 | + | 6958 | 0.66 | 0.944882 |
Target: 5'- aAAGUGGAaaaCGAGAGguguuccAGAGGCGUagcuauucucUGCCa -3' miRNA: 3'- -UUUACCUc--GCUUUU-------UUUCCGCG----------ACGG- -5' |
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12748 | 3' | -48 | NC_003356.1 | + | 6193 | 0.66 | 0.94005 |
Target: 5'- gAAAUGGAcaaugauuGCGAAAuaguAGGUGUUGUa -3' miRNA: 3'- -UUUACCU--------CGCUUUuuu-UCCGCGACGg -5' |
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12748 | 3' | -48 | NC_003356.1 | + | 26382 | 0.66 | 0.93437 |
Target: 5'- ---aGGGGCGuGAAGAuGGC-CUGCg -3' miRNA: 3'- uuuaCCUCGCuUUUUUuCCGcGACGg -5' |
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12748 | 3' | -48 | NC_003356.1 | + | 12147 | 0.67 | 0.928361 |
Target: 5'- -uAUGGcguaaCGAugaccuGGAAGGCGCUGUCa -3' miRNA: 3'- uuUACCuc---GCUuu----UUUUCCGCGACGG- -5' |
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12748 | 3' | -48 | NC_003356.1 | + | 11198 | 0.67 | 0.928361 |
Target: 5'- ---gGGAGCGGcu----GGCuGUUGCCa -3' miRNA: 3'- uuuaCCUCGCUuuuuuuCCG-CGACGG- -5' |
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12748 | 3' | -48 | NC_003356.1 | + | 23363 | 0.67 | 0.915354 |
Target: 5'- --cUGGAGCGuuuuGAGGGGCauacCUGCa -3' miRNA: 3'- uuuACCUCGCuuu-UUUUCCGc---GACGg -5' |
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12748 | 3' | -48 | NC_003356.1 | + | 27850 | 0.68 | 0.877165 |
Target: 5'- aAGGUGGcucAGCc------AGGCGCUGCCg -3' miRNA: 3'- -UUUACC---UCGcuuuuuuUCCGCGACGG- -5' |
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12748 | 3' | -48 | NC_003356.1 | + | 10619 | 0.69 | 0.83148 |
Target: 5'- ---cGGAGCGGGAu-AAGGuCGCUGa- -3' miRNA: 3'- uuuaCCUCGCUUUuuUUCC-GCGACgg -5' |
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12748 | 3' | -48 | NC_003356.1 | + | 37841 | 0.7 | 0.811375 |
Target: 5'- gGGAUGGuGUGccGGAAGGGCGCaUGUa -3' miRNA: 3'- -UUUACCuCGCuuUUUUUCCGCG-ACGg -5' |
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12748 | 3' | -48 | NC_003356.1 | + | 26408 | 0.8 | 0.2701 |
Target: 5'- --cUGGAGCGu----AAGGCGCUGCa -3' miRNA: 3'- uuuACCUCGCuuuuuUUCCGCGACGg -5' |
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12748 | 3' | -48 | NC_003356.1 | + | 25591 | 1.11 | 0.00249 |
Target: 5'- gAAAUGGAGCGAAAAAAAGGCGCUGCCu -3' miRNA: 3'- -UUUACCUCGCUUUUUUUCCGCGACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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