Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12750 | 5' | -48.3 | NC_003356.1 | + | 15757 | 0.66 | 0.950334 |
Target: 5'- cCGAAC-CGGCg--ACCGUCGggGAa- -3' miRNA: 3'- -GUUUGcGCCGauaUGGUAGCaaCUgg -5' |
|||||||
12750 | 5' | -48.3 | NC_003356.1 | + | 5174 | 0.67 | 0.94543 |
Target: 5'- --cACGCGGCUacGUGugGUCGUgcGCCg -3' miRNA: 3'- guuUGCGCCGA--UAUggUAGCAacUGG- -5' |
|||||||
12750 | 5' | -48.3 | NC_003356.1 | + | 20034 | 0.67 | 0.922713 |
Target: 5'- aGGugGCGGCUGU-UCAUgGUcUGGCUu -3' miRNA: 3'- gUUugCGCCGAUAuGGUAgCA-ACUGG- -5' |
|||||||
12750 | 5' | -48.3 | NC_003356.1 | + | 32084 | 0.68 | 0.909478 |
Target: 5'- --uGCGCcaCUGUGCCAUCaucUGACCg -3' miRNA: 3'- guuUGCGccGAUAUGGUAGca-ACUGG- -5' |
|||||||
12750 | 5' | -48.3 | NC_003356.1 | + | 27188 | 0.7 | 0.825649 |
Target: 5'- cCAAACGCaauGGCUuUugCAUCGgcGGCa -3' miRNA: 3'- -GUUUGCG---CCGAuAugGUAGCaaCUGg -5' |
|||||||
12750 | 5' | -48.3 | NC_003356.1 | + | 26443 | 0.71 | 0.7745 |
Target: 5'- aGAugGCGGUUAUGCCAUucCGgaagaacugGAUCg -3' miRNA: 3'- gUUugCGCCGAUAUGGUA--GCaa-------CUGG- -5' |
|||||||
12750 | 5' | -48.3 | NC_003356.1 | + | 27152 | 1.14 | 0.002032 |
Target: 5'- uCAAACGCGGCUAUACCAUCGUUGACCg -3' miRNA: 3'- -GUUUGCGCCGAUAUGGUAGCAACUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home