miRNA display CGI


Results 41 - 60 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 3' -62.7 NC_003387.1 + 47520 0.69 0.249259
Target:  5'- cGCAGUUCaugcaggGCGaCCguuacggcgaGGUCGUgcuCGUCGGCCg -3'
miRNA:   3'- -CGUCGAG-------CGC-GG----------CCAGCG---GCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 6853 0.72 0.150317
Target:  5'- cGCGaccGCUCagggcgccaacaaGaCGCCGGUCGCCGUCguGGCa -3'
miRNA:   3'- -CGU---CGAG-------------C-GCGGCCAGCGGCAG--CCGg -5'
12771 3' -62.7 NC_003387.1 + 26690 0.78 0.048613
Target:  5'- uGCAGCUCGCGCUGcucGUcgaCGCCGUCGuGCg -3'
miRNA:   3'- -CGUCGAGCGCGGC---CA---GCGGCAGC-CGg -5'
12771 3' -62.7 NC_003387.1 + 17157 0.69 0.243833
Target:  5'- gGCGGCcCGCGCUgagcuGGUgCGCCGccugggCGGCg -3'
miRNA:   3'- -CGUCGaGCGCGG-----CCA-GCGGCa-----GCCGg -5'
12771 3' -62.7 NC_003387.1 + 31941 0.79 0.041188
Target:  5'- aGCAGaucCGCGCCGGUCGCaucccCGGCCg -3'
miRNA:   3'- -CGUCga-GCGCGGCCAGCGgca--GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 44754 0.67 0.302644
Target:  5'- cGCAGCa--CGCCGccCGCCGUgaagCGGCCc -3'
miRNA:   3'- -CGUCGagcGCGGCcaGCGGCA----GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 11455 0.77 0.060568
Target:  5'- uGCAGCUCGcCGCCGGggCGCUcaaGUucaUGGCCg -3'
miRNA:   3'- -CGUCGAGC-GCGGCCa-GCGG---CA---GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 34312 0.67 0.295603
Target:  5'- aGCAGCcCGCGCUGc---CCG-CGGCCg -3'
miRNA:   3'- -CGUCGaGCGCGGCcagcGGCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 30196 0.68 0.281904
Target:  5'- aGCAG-UCGCcgaGCCGGUaCGCCGacgucgagCGcGCCg -3'
miRNA:   3'- -CGUCgAGCG---CGGCCA-GCGGCa-------GC-CGG- -5'
12771 3' -62.7 NC_003387.1 + 10671 0.68 0.268714
Target:  5'- cGCGGCU-GCGaccaCGGcCGCC-UCGGCg -3'
miRNA:   3'- -CGUCGAgCGCg---GCCaGCGGcAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 31022 0.68 0.262308
Target:  5'- -gAGCgUGCGCCGGg-GCgG-CGGCCa -3'
miRNA:   3'- cgUCGaGCGCGGCCagCGgCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 21777 0.69 0.249868
Target:  5'- cGCuGUUCGCGCUcaaGUUGaCCGcggCGGCCa -3'
miRNA:   3'- -CGuCGAGCGCGGc--CAGC-GGCa--GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 37292 0.69 0.249868
Target:  5'- gGCGcGCUCGUcgGCgCGGUCGUCGacCGcGCCg -3'
miRNA:   3'- -CGU-CGAGCG--CG-GCCAGCGGCa-GC-CGG- -5'
12771 3' -62.7 NC_003387.1 + 21712 0.69 0.23792
Target:  5'- cGCGGCcCGCGCCgaccuGGUCGUggaaauCGUC-GCCg -3'
miRNA:   3'- -CGUCGaGCGCGG-----CCAGCG------GCAGcCGG- -5'
12771 3' -62.7 NC_003387.1 + 13580 0.7 0.215458
Target:  5'- gGCAGgaCGUcgGCUGGUCGCCGcagUCuGGCa -3'
miRNA:   3'- -CGUCgaGCG--CGGCCAGCGGC---AG-CCGg -5'
12771 3' -62.7 NC_003387.1 + 29738 0.71 0.17151
Target:  5'- gGCAGCUaCGCgggcgaGCUGGaCGCCGaCGGCa -3'
miRNA:   3'- -CGUCGA-GCG------CGGCCaGCGGCaGCCGg -5'
12771 3' -62.7 NC_003387.1 + 35791 0.72 0.154676
Target:  5'- uGCAGCcccgagcUGUGCCucGG-CGCCGUCGGCg -3'
miRNA:   3'- -CGUCGa------GCGCGG--CCaGCGGCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 38425 0.72 0.146833
Target:  5'- aGCGGCUgGCGCUGGU-GCCcaagaaGGCCc -3'
miRNA:   3'- -CGUCGAgCGCGGCCAgCGGcag---CCGG- -5'
12771 3' -62.7 NC_003387.1 + 48230 0.73 0.115851
Target:  5'- cGCAcgaucGUgUCGCGcCCGGUCgGCCG-CGGCCa -3'
miRNA:   3'- -CGU-----CG-AGCGC-GGCCAG-CGGCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 10454 0.74 0.09609
Target:  5'- aCAGCgCGCuGUCGGUCGCCGgUGGCa -3'
miRNA:   3'- cGUCGaGCG-CGGCCAGCGGCaGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.