miRNA display CGI


Results 21 - 40 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 3' -62.7 NC_003387.1 + 29738 0.71 0.17151
Target:  5'- gGCAGCUaCGCgggcgaGCUGGaCGCCGaCGGCa -3'
miRNA:   3'- -CGUCGA-GCG------CGGCCaGCGGCaGCCGg -5'
12771 3' -62.7 NC_003387.1 + 35791 0.72 0.154676
Target:  5'- uGCAGCcccgagcUGUGCCucGG-CGCCGUCGGCg -3'
miRNA:   3'- -CGUCGa------GCGCGG--CCaGCGGCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 30567 0.74 0.109847
Target:  5'- cGCGGCcgguaCGCGCCGuGcCGCgagugcggguaCGUCGGCCa -3'
miRNA:   3'- -CGUCGa----GCGCGGC-CaGCG-----------GCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 21474 0.78 0.054272
Target:  5'- cGCAGCcCGCGCCGGUCggGCCG--GGCUg -3'
miRNA:   3'- -CGUCGaGCGCGGCCAG--CGGCagCCGG- -5'
12771 3' -62.7 NC_003387.1 + 28882 0.69 0.249868
Target:  5'- aGCGGCacgGCGCCGaGUC-CCGgcgCGGCg -3'
miRNA:   3'- -CGUCGag-CGCGGC-CAGcGGCa--GCCGg -5'
12771 3' -62.7 NC_003387.1 + 51505 0.69 0.23792
Target:  5'- aGCAGCUCGacgaGCCaugcccCGUCGaCGGCCa -3'
miRNA:   3'- -CGUCGAGCg---CGGcca---GCGGCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 6853 0.72 0.150317
Target:  5'- cGCGaccGCUCagggcgccaacaaGaCGCCGGUCGCCGUCguGGCa -3'
miRNA:   3'- -CGU---CGAG-------------C-GCGGCCAGCGGCAG--CCGg -5'
12771 3' -62.7 NC_003387.1 + 26690 0.78 0.048613
Target:  5'- uGCAGCUCGCGCUGcucGUcgaCGCCGUCGuGCg -3'
miRNA:   3'- -CGUCGAGCGCGGC---CA---GCGGCAGC-CGg -5'
12771 3' -62.7 NC_003387.1 + 13580 0.7 0.215458
Target:  5'- gGCAGgaCGUcgGCUGGUCGCCGcagUCuGGCa -3'
miRNA:   3'- -CGUCgaGCG--CGGCCAGCGGC---AG-CCGg -5'
12771 3' -62.7 NC_003387.1 + 31941 0.79 0.041188
Target:  5'- aGCAGaucCGCGCCGGUCGCaucccCGGCCg -3'
miRNA:   3'- -CGUCga-GCGCGGCCAGCGgca--GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 19231 0.72 0.154275
Target:  5'- uCAGCgUCGCGCCGGgccaggUGCucaacauCGUCGGCa -3'
miRNA:   3'- cGUCG-AGCGCGGCCa-----GCG-------GCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 10035 0.7 0.19484
Target:  5'- -gAGCcgaagCGCGCCGaGggcgCGgUGUCGGCCg -3'
miRNA:   3'- cgUCGa----GCGCGGC-Ca---GCgGCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 38425 0.72 0.146833
Target:  5'- aGCGGCUgGCGCUGGU-GCCcaagaaGGCCc -3'
miRNA:   3'- -CGUCGAgCGCGGCCAgCGGcag---CCGG- -5'
12771 3' -62.7 NC_003387.1 + 48230 0.73 0.115851
Target:  5'- cGCAcgaucGUgUCGCGcCCGGUCgGCCG-CGGCCa -3'
miRNA:   3'- -CGU-----CG-AGCGC-GGCCAG-CGGCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 10454 0.74 0.09609
Target:  5'- aCAGCgCGCuGUCGGUCGCCGgUGGCa -3'
miRNA:   3'- cGUCGaGCG-CGGCCAGCGGCaGCCGg -5'
12771 3' -62.7 NC_003387.1 + 11455 0.77 0.060568
Target:  5'- uGCAGCUCGcCGCCGGggCGCUcaaGUucaUGGCCg -3'
miRNA:   3'- -CGUCGAGC-GCGGCCa-GCGG---CA---GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 21777 0.69 0.249868
Target:  5'- cGCuGUUCGCGCUcaaGUUGaCCGcggCGGCCa -3'
miRNA:   3'- -CGuCGAGCGCGGc--CAGC-GGCa--GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 37292 0.69 0.249868
Target:  5'- gGCGcGCUCGUcgGCgCGGUCGUCGacCGcGCCg -3'
miRNA:   3'- -CGU-CGAGCG--CG-GCCAGCGGCa-GC-CGG- -5'
12771 3' -62.7 NC_003387.1 + 1084 0.69 0.23792
Target:  5'- aCGGCUCGCGCauccuguuCGGUgcccgcgagCGCgGguUCGGCCg -3'
miRNA:   3'- cGUCGAGCGCG--------GCCA---------GCGgC--AGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 3346 0.69 0.23792
Target:  5'- --cGCUCGUuugGCgCGGUCGUCGaCGGCa -3'
miRNA:   3'- cguCGAGCG---CG-GCCAGCGGCaGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.