miRNA display CGI


Results 21 - 40 of 263 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 3' -62.7 NC_003387.1 + 12299 0.74 0.098704
Target:  5'- -gGGC-CGgGCCGGuUCGCCGUC-GCCg -3'
miRNA:   3'- cgUCGaGCgCGGCC-AGCGGCAGcCGG- -5'
12771 3' -62.7 NC_003387.1 + 13657 0.74 0.098704
Target:  5'- gGCGGCUCGguCGCCGaGggCGCCGUCGacGCUa -3'
miRNA:   3'- -CGUCGAGC--GCGGC-Ca-GCGGCAGC--CGG- -5'
12771 3' -62.7 NC_003387.1 + 35316 0.74 0.098704
Target:  5'- aCAGCcugacggCGuCGCCGGUCGCgGgaauuUCGGCCa -3'
miRNA:   3'- cGUCGa------GC-GCGGCCAGCGgC-----AGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 40423 0.74 0.104136
Target:  5'- --cGCUCGUGCCGGUgcccggccCGCUGaucCGGCCg -3'
miRNA:   3'- cguCGAGCGCGGCCA--------GCGGCa--GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 4090 0.74 0.104136
Target:  5'- cGCAuGCUCGCGacccgCGG-CGCCGuguacaagUCGGCCg -3'
miRNA:   3'- -CGU-CGAGCGCg----GCCaGCGGC--------AGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 31300 0.74 0.104136
Target:  5'- cGUAGCUgcUGCGCCGGgcCGCCGggGGCg -3'
miRNA:   3'- -CGUCGA--GCGCGGCCa-GCGGCagCCGg -5'
12771 3' -62.7 NC_003387.1 + 12336 0.74 0.104136
Target:  5'- uGCAGCUCGcCGCCGacGUCgagGCCcUUGGCCc -3'
miRNA:   3'- -CGUCGAGC-GCGGC--CAG---CGGcAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 46940 0.74 0.106102
Target:  5'- gGCGGCUUGUuCUGGUCacgccaggcgaucaGCuCGUCGGCCg -3'
miRNA:   3'- -CGUCGAGCGcGGCCAG--------------CG-GCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 26188 0.74 0.106956
Target:  5'- cGCGuGCUUGCcugacgGCUcGUCGUCGUCGGCCu -3'
miRNA:   3'- -CGU-CGAGCG------CGGcCAGCGGCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 26664 0.74 0.109555
Target:  5'- cGCAGcCUCGCGaaugUGGUacucgaugugcggCGCCGUCGGCg -3'
miRNA:   3'- -CGUC-GAGCGCg---GCCA-------------GCGGCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 29630 0.74 0.109847
Target:  5'- aGCGGCUUGcCGUacaGGaaugUGCUGUCGGCCu -3'
miRNA:   3'- -CGUCGAGC-GCGg--CCa---GCGGCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 30567 0.74 0.109847
Target:  5'- cGCGGCcgguaCGCGCCGuGcCGCgagugcggguaCGUCGGCCa -3'
miRNA:   3'- -CGUCGa----GCGCGGC-CaGCG-----------GCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 21169 0.74 0.112812
Target:  5'- cGCAGCUCGUGUCGcGggGCUGUCauGGCUg -3'
miRNA:   3'- -CGUCGAGCGCGGC-CagCGGCAG--CCGG- -5'
12771 3' -62.7 NC_003387.1 + 12560 0.73 0.115544
Target:  5'- -gGGCUCGacgacgaucgggcCGCCGacgguGUCGCCGUgGGCCu -3'
miRNA:   3'- cgUCGAGC-------------GCGGC-----CAGCGGCAgCCGG- -5'
12771 3' -62.7 NC_003387.1 + 48230 0.73 0.115851
Target:  5'- cGCAcgaucGUgUCGCGcCCGGUCgGCCG-CGGCCa -3'
miRNA:   3'- -CGU-----CG-AGCGC-GGCCAG-CGGCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 15676 0.73 0.115851
Target:  5'- --cGCUCGCcagGCCGucaguGUCGCCGUgccCGGCCa -3'
miRNA:   3'- cguCGAGCG---CGGC-----CAGCGGCA---GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 21675 0.73 0.115851
Target:  5'- cGguGCcaUCgGCGCCGGU-GCCGUgcUGGCCg -3'
miRNA:   3'- -CguCG--AG-CGCGGCCAgCGGCA--GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 10186 0.73 0.125434
Target:  5'- cCAGCUCgGCGUCGGUCaugcggGCCGcgugaUCGGUCg -3'
miRNA:   3'- cGUCGAG-CGCGGCCAG------CGGC-----AGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 5432 0.73 0.128449
Target:  5'- uGCGGCguuUCGCGUuucguggUGGUCaGUCGUCGGUCa -3'
miRNA:   3'- -CGUCG---AGCGCG-------GCCAG-CGGCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 737 0.73 0.128788
Target:  5'- gGCAGg-UGCGCCaGGaUGCgGUCGGCCa -3'
miRNA:   3'- -CGUCgaGCGCGG-CCaGCGgCAGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.