miRNA display CGI


Results 21 - 40 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 3' -62.7 NC_003387.1 + 7350 0.66 0.370141
Target:  5'- cGCAGCUaacCGCCGGcaaaaacucgagcgCGUCGccugagcugcacggaUCGGCCg -3'
miRNA:   3'- -CGUCGAgc-GCGGCCa-------------GCGGC---------------AGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 9725 0.66 0.363597
Target:  5'- uCAGCgcguaCGgGUCGG-CGUCaagGUCGGCCa -3'
miRNA:   3'- cGUCGa----GCgCGGCCaGCGG---CAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 6060 0.66 0.363597
Target:  5'- gGCAGguucgagCGCaccaugacgaccGCCGGggCGUCGUCGGCa -3'
miRNA:   3'- -CGUCga-----GCG------------CGGCCa-GCGGCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 33979 0.66 0.363597
Target:  5'- aGCuGC-CGCaGCgGGUCGCgGUCGacgacgagcuGCCu -3'
miRNA:   3'- -CGuCGaGCG-CGgCCAGCGgCAGC----------CGG- -5'
12771 3' -62.7 NC_003387.1 + 51894 0.66 0.363597
Target:  5'- uGUGGC-CGCGUacaGGcCGUCGUCGcGCUu -3'
miRNA:   3'- -CGUCGaGCGCGg--CCaGCGGCAGC-CGG- -5'
12771 3' -62.7 NC_003387.1 + 2822 0.66 0.363597
Target:  5'- cGCAGCUCaGCGCacaaauCGGcUGCuCGcCGGCa -3'
miRNA:   3'- -CGUCGAG-CGCG------GCCaGCG-GCaGCCGg -5'
12771 3' -62.7 NC_003387.1 + 22155 0.66 0.363597
Target:  5'- cGCGGCacggCGCGuaCCGGcCGCgG-CGGCg -3'
miRNA:   3'- -CGUCGa---GCGC--GGCCaGCGgCaGCCGg -5'
12771 3' -62.7 NC_003387.1 + 51106 0.66 0.363597
Target:  5'- cCAGCaCGCGCCGaccgaaaUCGCCa--GGCCg -3'
miRNA:   3'- cGUCGaGCGCGGCc------AGCGGcagCCGG- -5'
12771 3' -62.7 NC_003387.1 + 6132 0.66 0.363597
Target:  5'- aGCGGCUUgaggGCGCCacugugagGGUCGgCGUa-GCCg -3'
miRNA:   3'- -CGUCGAG----CGCGG--------CCAGCgGCAgcCGG- -5'
12771 3' -62.7 NC_003387.1 + 27900 0.66 0.358742
Target:  5'- cCAGC-CGC-CCGaGUaCGCCGagcugcugcgccaggUCGGCCg -3'
miRNA:   3'- cGUCGaGCGcGGC-CA-GCGGC---------------AGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 48432 0.66 0.35553
Target:  5'- cGCGGU--GCGCUGcUCGCCcG-CGGCCu -3'
miRNA:   3'- -CGUCGagCGCGGCcAGCGG-CaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 12929 0.66 0.35553
Target:  5'- gGUGGCUCgucgGCGCuCGGcagUGCCacGUCGGCg -3'
miRNA:   3'- -CGUCGAG----CGCG-GCCa--GCGG--CAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 44885 0.66 0.35553
Target:  5'- uCGGCgauuccgccugCGCGCCGGgCaCC-UCGGCCg -3'
miRNA:   3'- cGUCGa----------GCGCGGCCaGcGGcAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 32595 0.66 0.35553
Target:  5'- uCGGUUUcgGUGUCGGUguuggUGCCGUCGGUg -3'
miRNA:   3'- cGUCGAG--CGCGGCCA-----GCGGCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 19857 0.66 0.35553
Target:  5'- -gAGCUgGCaGUCGG-CGCaGUCGGCg -3'
miRNA:   3'- cgUCGAgCG-CGGCCaGCGgCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 48217 0.66 0.347591
Target:  5'- cGCAGCa---GCCGGUCGagcggggccuCCGcgggcUCGGCCu -3'
miRNA:   3'- -CGUCGagcgCGGCCAGC----------GGC-----AGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 41973 0.66 0.347591
Target:  5'- aGgAGCUgCGCGCggaGGcCGCCG-CGGUg -3'
miRNA:   3'- -CgUCGA-GCGCGg--CCaGCGGCaGCCGg -5'
12771 3' -62.7 NC_003387.1 + 49524 0.66 0.347591
Target:  5'- gGCgAGCUUGCGCUgcuGGUUGgccuCCG-CGGCUg -3'
miRNA:   3'- -CG-UCGAGCGCGG---CCAGC----GGCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 28258 0.66 0.347591
Target:  5'- aGCGGUUCGUacaGUCGGUCgagGCCGccaaGGCUc -3'
miRNA:   3'- -CGUCGAGCG---CGGCCAG---CGGCag--CCGG- -5'
12771 3' -62.7 NC_003387.1 + 9283 0.66 0.347591
Target:  5'- aGCAGCUUGaccuuggccuCGUCGaacUUGCUGUCGGCg -3'
miRNA:   3'- -CGUCGAGC----------GCGGCc--AGCGGCAGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.