miRNA display CGI


Results 21 - 40 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 3' -62.7 NC_003387.1 + 4366 0.66 0.346804
Target:  5'- -uGGCUCGaCGCCGaGUucguccacaacaaCGCCGUCGaCUa -3'
miRNA:   3'- cgUCGAGC-GCGGC-CA-------------GCGGCAGCcGG- -5'
12771 3' -62.7 NC_003387.1 + 4589 0.67 0.302644
Target:  5'- gGCGcGCUgCGCGCgGGUCuGCCacgugaUCGGCg -3'
miRNA:   3'- -CGU-CGA-GCGCGgCCAG-CGGc-----AGCCGg -5'
12771 3' -62.7 NC_003387.1 + 5010 0.67 0.302644
Target:  5'- -gGGCcUGCGCCGGUgucaUGUgGUUGGUCa -3'
miRNA:   3'- cgUCGaGCGCGGCCA----GCGgCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 5148 0.67 0.317112
Target:  5'- gGC-GCUCgGCGCCGGUCGgugcagucaauCCGUauGCg -3'
miRNA:   3'- -CGuCGAG-CGCGGCCAGC-----------GGCAgcCGg -5'
12771 3' -62.7 NC_003387.1 + 5318 0.67 0.331333
Target:  5'- -gGGCUCGgggcgggGCCGGUUGCCccgcgcuugcgguGUCGGUg -3'
miRNA:   3'- cgUCGAGCg------CGGCCAGCGG-------------CAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 5432 0.73 0.128449
Target:  5'- uGCGGCguuUCGCGUuucguggUGGUCaGUCGUCGGUCa -3'
miRNA:   3'- -CGUCG---AGCGCG-------GCCAG-CGGCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 5733 0.75 0.086275
Target:  5'- gGCGGCcCGCGCUcGUCGUCGUCGcCCg -3'
miRNA:   3'- -CGUCGaGCGCGGcCAGCGGCAGCcGG- -5'
12771 3' -62.7 NC_003387.1 + 5900 0.67 0.309091
Target:  5'- cGCGGCagaagcaUUGCGCCGcuuacgCGCCGggGGCUg -3'
miRNA:   3'- -CGUCG-------AGCGCGGCca----GCGGCagCCGG- -5'
12771 3' -62.7 NC_003387.1 + 5972 0.69 0.232127
Target:  5'- aGUcGCUCGacccgGCCGGUUGCCGcCGuGCa -3'
miRNA:   3'- -CGuCGAGCg----CGGCCAGCGGCaGC-CGg -5'
12771 3' -62.7 NC_003387.1 + 6060 0.66 0.363597
Target:  5'- gGCAGguucgagCGCaccaugacgaccGCCGGggCGUCGUCGGCa -3'
miRNA:   3'- -CGUCga-----GCG------------CGGCCa-GCGGCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 6132 0.66 0.363597
Target:  5'- aGCGGCUUgaggGCGCCacugugagGGUCGgCGUa-GCCg -3'
miRNA:   3'- -CGUCGAG----CGCGG--------CCAGCgGCAgcCGG- -5'
12771 3' -62.7 NC_003387.1 + 6298 0.72 0.146833
Target:  5'- cGUGGC-CGUGCUgaccgaGGUCGCCGagcugggCGGCCa -3'
miRNA:   3'- -CGUCGaGCGCGG------CCAGCGGCa------GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 6824 0.67 0.332095
Target:  5'- uGCAGaUCGgGCggcaGGUCGaucgcCCGcUCGGCCg -3'
miRNA:   3'- -CGUCgAGCgCGg---CCAGC-----GGC-AGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 6853 0.72 0.150317
Target:  5'- cGCGaccGCUCagggcgccaacaaGaCGCCGGUCGCCGUCguGGCa -3'
miRNA:   3'- -CGU---CGAG-------------C-GCGGCCAGCGGCAG--CCGg -5'
12771 3' -62.7 NC_003387.1 + 6875 0.79 0.047291
Target:  5'- aGCAGCUCGCGCaggaucuccgCGG-CGUCGUCgcgGGCCa -3'
miRNA:   3'- -CGUCGAGCGCG----------GCCaGCGGCAG---CCGG- -5'
12771 3' -62.7 NC_003387.1 + 6955 0.68 0.275246
Target:  5'- aGCGGCgggcagGCGCCacagcgCGCCcUCGGCCa -3'
miRNA:   3'- -CGUCGag----CGCGGcca---GCGGcAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 7018 0.66 0.370965
Target:  5'- aGCAGCUCG-GCCGcuuUCGC-GUucaacggcaggccCGGCCg -3'
miRNA:   3'- -CGUCGAGCgCGGCc--AGCGgCA-------------GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 7173 0.67 0.295603
Target:  5'- -gAGCUgGCGgCGGaUCGCCuugccgcaCGGCCa -3'
miRNA:   3'- cgUCGAgCGCgGCC-AGCGGca------GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 7350 0.66 0.370141
Target:  5'- cGCAGCUaacCGCCGGcaaaaacucgagcgCGUCGccugagcugcacggaUCGGCCg -3'
miRNA:   3'- -CGUCGAgc-GCGGCCa-------------GCGGC---------------AGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 7623 0.67 0.309814
Target:  5'- cGCGGCgUCGaCGaCCuGGcCGCCGaacacCGGCCc -3'
miRNA:   3'- -CGUCG-AGC-GC-GG-CCaGCGGCa----GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.