miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 3' -62.7 NC_003387.1 + 460 0.69 0.232127
Target:  5'- cGCGcGCUCGgGCgCGGcgUUGCCGUCaGUCu -3'
miRNA:   3'- -CGU-CGAGCgCG-GCC--AGCGGCAGcCGG- -5'
12771 3' -62.7 NC_003387.1 + 737 0.73 0.128788
Target:  5'- gGCAGg-UGCGCCaGGaUGCgGUCGGCCa -3'
miRNA:   3'- -CGUCgaGCGCGG-CCaGCGgCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 782 0.69 0.23792
Target:  5'- gGCAGCUUcucaGCgaGCCGGgucaCGaugaUGUCGGCCa -3'
miRNA:   3'- -CGUCGAG----CG--CGGCCa---GCg---GCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 1084 0.69 0.23792
Target:  5'- aCGGCUCGCGCauccuguuCGGUgcccgcgagCGCgGguUCGGCCg -3'
miRNA:   3'- cGUCGAGCGCG--------GCCA---------GCGgC--AGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 1254 0.67 0.302644
Target:  5'- gGC-GUUCGCgguGUCGGUUGCgGUgCGGCUg -3'
miRNA:   3'- -CGuCGAGCG---CGGCCAGCGgCA-GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 1301 0.71 0.162898
Target:  5'- cGCAGUUCgaggcgGCGCCGcaggcgcUCGCCGgucacCGGCCg -3'
miRNA:   3'- -CGUCGAG------CGCGGCc------AGCGGCa----GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 1354 0.69 0.220898
Target:  5'- uCGGcCUCGCuccaCGGcaccUCGCCGUCGGCg -3'
miRNA:   3'- cGUC-GAGCGcg--GCC----AGCGGCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 1446 0.66 0.370965
Target:  5'- -gGGCUCGgggucgucguccuCGUCgaGGUCGUCGagGGCCa -3'
miRNA:   3'- cgUCGAGC-------------GCGG--CCAGCGGCagCCGG- -5'
12771 3' -62.7 NC_003387.1 + 1629 0.71 0.167154
Target:  5'- gGCAGcCUCGCGCgGGUugcgCGCUGUUuugGGCa -3'
miRNA:   3'- -CGUC-GAGCGCGgCCA----GCGGCAG---CCGg -5'
12771 3' -62.7 NC_003387.1 + 2017 0.67 0.309814
Target:  5'- gGCccuGCUCgGUGCCGccgacggccgccGUCGCCGagcUGGCCg -3'
miRNA:   3'- -CGu--CGAG-CGCGGC------------CAGCGGCa--GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 2175 0.82 0.02497
Target:  5'- aGCAGCUCgGCGCCuuGGUCGCCGacauguggCGGCUg -3'
miRNA:   3'- -CGUCGAG-CGCGG--CCAGCGGCa-------GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 2333 0.72 0.143048
Target:  5'- aCAGCUCG-GCggugucgaGGcCGCCGUCGGCg -3'
miRNA:   3'- cGUCGAGCgCGg-------CCaGCGGCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 2516 0.68 0.28869
Target:  5'- -aGGUgaCGCGCgGGUCGUCGUU-GCCg -3'
miRNA:   3'- cgUCGa-GCGCGgCCAGCGGCAGcCGG- -5'
12771 3' -62.7 NC_003387.1 + 2535 0.7 0.199827
Target:  5'- cGguGUUC-CGCacgCGGUCGCCG-CGGCa -3'
miRNA:   3'- -CguCGAGcGCG---GCCAGCGGCaGCCGg -5'
12771 3' -62.7 NC_003387.1 + 2822 0.66 0.363597
Target:  5'- cGCAGCUCaGCGCacaaauCGGcUGCuCGcCGGCa -3'
miRNA:   3'- -CGUCGAG-CGCG------GCCaGCG-GCaGCCGg -5'
12771 3' -62.7 NC_003387.1 + 3346 0.69 0.23792
Target:  5'- --cGCUCGUuugGCgCGGUCGUCGaCGGCa -3'
miRNA:   3'- cguCGAGCG---CG-GCCAGCGGCaGCCGg -5'
12771 3' -62.7 NC_003387.1 + 3628 0.7 0.210135
Target:  5'- -gAGCgggCGUGCgGGuaUCGCCGUCGaCCg -3'
miRNA:   3'- cgUCGa--GCGCGgCC--AGCGGCAGCcGG- -5'
12771 3' -62.7 NC_003387.1 + 3655 0.66 0.37179
Target:  5'- nCGGCUCGUGCCccg-GCUGagCGGCCu -3'
miRNA:   3'- cGUCGAGCGCGGccagCGGCa-GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 3876 0.66 0.339779
Target:  5'- aGCuGUUUGUGCCGGaaccggCGCCG-CuGCCc -3'
miRNA:   3'- -CGuCGAGCGCGGCCa-----GCGGCaGcCGG- -5'
12771 3' -62.7 NC_003387.1 + 4090 0.74 0.104136
Target:  5'- cGCAuGCUCGCGacccgCGG-CGCCGuguacaagUCGGCCg -3'
miRNA:   3'- -CGU-CGAGCGCg----GCCaGCGGC--------AGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.