miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 3' -62.7 NC_003387.1 + 52253 1.13 0.000111
Target:  5'- aGCAGCUCGCGCCGGUCGCCGUCGGCCg -3'
miRNA:   3'- -CGUCGAGCGCGGCCAGCGGCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 2175 0.82 0.02497
Target:  5'- aGCAGCUCgGCGCCuuGGUCGCCGacauguggCGGCUg -3'
miRNA:   3'- -CGUCGAG-CGCGG--CCAGCGGCa-------GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 31941 0.79 0.041188
Target:  5'- aGCAGaucCGCGCCGGUCGCaucccCGGCCg -3'
miRNA:   3'- -CGUCga-GCGCGGCCAGCGgca--GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 6875 0.79 0.047291
Target:  5'- aGCAGCUCGCGCaggaucuccgCGG-CGUCGUCgcgGGCCa -3'
miRNA:   3'- -CGUCGAGCGCG----------GCCaGCGGCAG---CCGG- -5'
12771 3' -62.7 NC_003387.1 + 10508 0.78 0.048613
Target:  5'- cGCGGU--GCGCCGGUCGCCGUCcuGCUc -3'
miRNA:   3'- -CGUCGagCGCGGCCAGCGGCAGc-CGG- -5'
12771 3' -62.7 NC_003387.1 + 25521 0.78 0.048613
Target:  5'- cGCAGaCUUGCGCCGGUUGCgcUCGcGCCa -3'
miRNA:   3'- -CGUC-GAGCGCGGCCAGCGgcAGC-CGG- -5'
12771 3' -62.7 NC_003387.1 + 26690 0.78 0.048613
Target:  5'- uGCAGCUCGCGCUGcucGUcgaCGCCGUCGuGCg -3'
miRNA:   3'- -CGUCGAGCGCGGC---CA---GCGGCAGC-CGg -5'
12771 3' -62.7 NC_003387.1 + 21474 0.78 0.054272
Target:  5'- cGCAGCcCGCGCCGGUCggGCCG--GGCUg -3'
miRNA:   3'- -CGUCGaGCGCGGCCAG--CGGCagCCGG- -5'
12771 3' -62.7 NC_003387.1 + 43291 0.77 0.060568
Target:  5'- aCAGCUCgGCGcCCGcGUCGUacuCGUCGGCCc -3'
miRNA:   3'- cGUCGAG-CGC-GGC-CAGCG---GCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 11455 0.77 0.060568
Target:  5'- uGCAGCUCGcCGCCGGggCGCUcaaGUucaUGGCCg -3'
miRNA:   3'- -CGUCGAGC-GCGGCCa-GCGG---CA---GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 48786 0.77 0.065748
Target:  5'- cCAGCUCGcCGCUGaUCGCCGcggcggCGGCCa -3'
miRNA:   3'- cGUCGAGC-GCGGCcAGCGGCa-----GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 52527 0.77 0.067568
Target:  5'- cGCGGCaaugUCGCggGCCGaGUCgagcaccgucuuGCCGUCGGCCa -3'
miRNA:   3'- -CGUCG----AGCG--CGGC-CAG------------CGGCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 22987 0.76 0.071354
Target:  5'- cCAGCUCGC-CCGcGUagcugcCGUCGUCGGCCu -3'
miRNA:   3'- cGUCGAGCGcGGC-CA------GCGGCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 31385 0.76 0.075344
Target:  5'- uGCAGgUCGUuguaCUGGUCGCCGUCaGCCc -3'
miRNA:   3'- -CGUCgAGCGc---GGCCAGCGGCAGcCGG- -5'
12771 3' -62.7 NC_003387.1 + 5733 0.75 0.086275
Target:  5'- gGCGGCcCGCGCUcGUCGUCGUCGcCCg -3'
miRNA:   3'- -CGUCGaGCGCGGcCAGCGGCAGCcGG- -5'
12771 3' -62.7 NC_003387.1 + 42916 0.75 0.091057
Target:  5'- cGCAGCcugcaGCGCCGGUCGCUcgacaacaugGUCGcGCUc -3'
miRNA:   3'- -CGUCGag---CGCGGCCAGCGG----------CAGC-CGG- -5'
12771 3' -62.7 NC_003387.1 + 10653 0.75 0.091057
Target:  5'- cGCAGCacgCGCGCCaGGUCguacacGCCG-CGGUCg -3'
miRNA:   3'- -CGUCGa--GCGCGG-CCAG------CGGCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 10454 0.74 0.09609
Target:  5'- aCAGCgCGCuGUCGGUCGCCGgUGGCa -3'
miRNA:   3'- cGUCGaGCG-CGGCCAGCGGCaGCCGg -5'
12771 3' -62.7 NC_003387.1 + 22100 0.74 0.09609
Target:  5'- cGCuuguGCUUGCGCaGGUUGCCGUgcgucgugaugUGGCCg -3'
miRNA:   3'- -CGu---CGAGCGCGgCCAGCGGCA-----------GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 16315 0.74 0.098704
Target:  5'- uGCAGCUCgGCGCCGGUgucgauguUGaCCG-CGGCg -3'
miRNA:   3'- -CGUCGAG-CGCGGCCA--------GC-GGCaGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.