Results 1 - 20 of 263 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12771 | 3' | -62.7 | NC_003387.1 | + | 38631 | 0.66 | 0.388548 |
Target: 5'- cGCAgGC-CGCGCUGG-CGCUGcaguucCGGCg -3' miRNA: 3'- -CGU-CGaGCGCGGCCaGCGGCa-----GCCGg -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 7350 | 0.66 | 0.370141 |
Target: 5'- cGCAGCUaacCGCCGGcaaaaacucgagcgCGUCGccugagcugcacggaUCGGCCg -3' miRNA: 3'- -CGUCGAgc-GCGGCCa-------------GCGGC---------------AGCCGG- -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 51106 | 0.66 | 0.363597 |
Target: 5'- cCAGCaCGCGCCGaccgaaaUCGCCa--GGCCg -3' miRNA: 3'- cGUCGaGCGCGGCc------AGCGGcagCCGG- -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 22155 | 0.66 | 0.363597 |
Target: 5'- cGCGGCacggCGCGuaCCGGcCGCgG-CGGCg -3' miRNA: 3'- -CGUCGa---GCGC--GGCCaGCGgCaGCCGg -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 2822 | 0.66 | 0.363597 |
Target: 5'- cGCAGCUCaGCGCacaaauCGGcUGCuCGcCGGCa -3' miRNA: 3'- -CGUCGAG-CGCG------GCCaGCG-GCaGCCGg -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 51894 | 0.66 | 0.363597 |
Target: 5'- uGUGGC-CGCGUacaGGcCGUCGUCGcGCUu -3' miRNA: 3'- -CGUCGaGCGCGg--CCaGCGGCAGC-CGG- -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 33979 | 0.66 | 0.363597 |
Target: 5'- aGCuGC-CGCaGCgGGUCGCgGUCGacgacgagcuGCCu -3' miRNA: 3'- -CGuCGaGCG-CGgCCAGCGgCAGC----------CGG- -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 9725 | 0.66 | 0.363597 |
Target: 5'- uCAGCgcguaCGgGUCGG-CGUCaagGUCGGCCa -3' miRNA: 3'- cGUCGa----GCgCGGCCaGCGG---CAGCCGG- -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 6132 | 0.66 | 0.363597 |
Target: 5'- aGCGGCUUgaggGCGCCacugugagGGUCGgCGUa-GCCg -3' miRNA: 3'- -CGUCGAG----CGCGG--------CCAGCgGCAgcCGG- -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 1446 | 0.66 | 0.370965 |
Target: 5'- -gGGCUCGgggucgucguccuCGUCgaGGUCGUCGagGGCCa -3' miRNA: 3'- cgUCGAGC-------------GCGG--CCAGCGGCagCCGG- -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 7018 | 0.66 | 0.370965 |
Target: 5'- aGCAGCUCG-GCCGcuuUCGC-GUucaacggcaggccCGGCCg -3' miRNA: 3'- -CGUCGAGCgCGGCc--AGCGgCA-------------GCCGG- -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 14073 | 0.66 | 0.371789 |
Target: 5'- uGCGGauugaUGCGCCGGaacugcagCGCCagcgCGGCCu -3' miRNA: 3'- -CGUCga---GCGCGGCCa-------GCGGca--GCCGG- -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 47282 | 0.66 | 0.388548 |
Target: 5'- -uGGC-CGcCGUCGG-CGCCcUCGGUCg -3' miRNA: 3'- cgUCGaGC-GCGGCCaGCGGcAGCCGG- -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 44607 | 0.66 | 0.388548 |
Target: 5'- aGCAGCgCGUacgaGCUGGgcUCGCCcUCGGgCg -3' miRNA: 3'- -CGUCGaGCG----CGGCC--AGCGGcAGCCgG- -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 16915 | 0.66 | 0.388548 |
Target: 5'- -gAGCaUCGCGCCGacggCGCCGa-GGCa -3' miRNA: 3'- cgUCG-AGCGCGGCca--GCGGCagCCGg -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 8282 | 0.66 | 0.388548 |
Target: 5'- cGCAGCgccucgugCGCGUCGGcgggcagcaUCGCgagcacagCGUCaGCCg -3' miRNA: 3'- -CGUCGa-------GCGCGGCC---------AGCG--------GCAGcCGG- -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 48378 | 0.66 | 0.380107 |
Target: 5'- cCAGUcgcuuacgUUGCGCUGGUgCGCCuucUCGGCg -3' miRNA: 3'- cGUCG--------AGCGCGGCCA-GCGGc--AGCCGg -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 33399 | 0.66 | 0.380107 |
Target: 5'- --cGC-CGCGCUcGUCGCUGuacUCGGUCa -3' miRNA: 3'- cguCGaGCGCGGcCAGCGGC---AGCCGG- -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 16178 | 0.66 | 0.380107 |
Target: 5'- cCAGCUUccaauaggcgGCGUCGGU-GCUGUCGGg- -3' miRNA: 3'- cGUCGAG----------CGCGGCCAgCGGCAGCCgg -5' |
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12771 | 3' | -62.7 | NC_003387.1 | + | 11885 | 0.66 | 0.380107 |
Target: 5'- aGC-GCgUCGCGCacgauCGG-CGCCGUCuugugcccuuuGGCCu -3' miRNA: 3'- -CGuCG-AGCGCG-----GCCaGCGGCAG-----------CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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