miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 3' -62.7 NC_003387.1 + 2175 0.82 0.02497
Target:  5'- aGCAGCUCgGCGCCuuGGUCGCCGacauguggCGGCUg -3'
miRNA:   3'- -CGUCGAG-CGCGG--CCAGCGGCa-------GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 6853 0.72 0.150317
Target:  5'- cGCGaccGCUCagggcgccaacaaGaCGCCGGUCGCCGUCguGGCa -3'
miRNA:   3'- -CGU---CGAG-------------C-GCGGCCAGCGGCAG--CCGg -5'
12771 3' -62.7 NC_003387.1 + 35791 0.72 0.154676
Target:  5'- uGCAGCcccgagcUGUGCCucGG-CGCCGUCGGCg -3'
miRNA:   3'- -CGUCGa------GCGCGG--CCaGCGGCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 38631 0.66 0.388548
Target:  5'- cGCAgGC-CGCGCUGG-CGCUGcaguucCGGCg -3'
miRNA:   3'- -CGU-CGaGCGCGGCCaGCGGCa-----GCCGg -5'
12771 3' -62.7 NC_003387.1 + 11455 0.77 0.060568
Target:  5'- uGCAGCUCGcCGCCGGggCGCUcaaGUucaUGGCCg -3'
miRNA:   3'- -CGUCGAGC-GCGGCCa-GCGG---CA---GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 48786 0.77 0.065748
Target:  5'- cCAGCUCGcCGCUGaUCGCCGcggcggCGGCCa -3'
miRNA:   3'- cGUCGAGC-GCGGCcAGCGGCa-----GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 10454 0.74 0.09609
Target:  5'- aCAGCgCGCuGUCGGUCGCCGgUGGCa -3'
miRNA:   3'- cGUCGaGCG-CGGCCAGCGGCaGCCGg -5'
12771 3' -62.7 NC_003387.1 + 13657 0.74 0.098704
Target:  5'- gGCGGCUCGguCGCCGaGggCGCCGUCGacGCUa -3'
miRNA:   3'- -CGUCGAGC--GCGGC-Ca-GCGGCAGC--CGG- -5'
12771 3' -62.7 NC_003387.1 + 48230 0.73 0.115851
Target:  5'- cGCAcgaucGUgUCGCGcCCGGUCgGCCG-CGGCCa -3'
miRNA:   3'- -CGU-----CG-AGCGC-GGCCAG-CGGCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 30483 0.72 0.150317
Target:  5'- --uGCUUcccgucgGCGCCGGUCGaguggaCCGUCGGCa -3'
miRNA:   3'- cguCGAG-------CGCGGCCAGC------GGCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 18935 0.72 0.141931
Target:  5'- cGCAGCuucUCGCGaCGGUCGgcaagaucucgguuUCGUCGGCa -3'
miRNA:   3'- -CGUCG---AGCGCgGCCAGC--------------GGCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 30567 0.74 0.109847
Target:  5'- cGCGGCcgguaCGCGCCGuGcCGCgagugcggguaCGUCGGCCa -3'
miRNA:   3'- -CGUCGa----GCGCGGC-CaGCG-----------GCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 31941 0.79 0.041188
Target:  5'- aGCAGaucCGCGCCGGUCGCaucccCGGCCg -3'
miRNA:   3'- -CGUCga-GCGCGGCCAGCGgca--GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 38425 0.72 0.146833
Target:  5'- aGCGGCUgGCGCUGGU-GCCcaagaaGGCCc -3'
miRNA:   3'- -CGUCGAgCGCGGCCAgCGGcag---CCGG- -5'
12771 3' -62.7 NC_003387.1 + 26690 0.78 0.048613
Target:  5'- uGCAGCUCGCGCUGcucGUcgaCGCCGUCGuGCg -3'
miRNA:   3'- -CGUCGAGCGCGGC---CA---GCGGCAGC-CGg -5'
12771 3' -62.7 NC_003387.1 + 4090 0.74 0.104136
Target:  5'- cGCAuGCUCGCGacccgCGG-CGCCGuguacaagUCGGCCg -3'
miRNA:   3'- -CGU-CGAGCGCg----GCCaGCGGC--------AGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 6298 0.72 0.146833
Target:  5'- cGUGGC-CGUGCUgaccgaGGUCGCCGagcugggCGGCCa -3'
miRNA:   3'- -CGUCGaGCGCGG------CCAGCGGCa------GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 19231 0.72 0.154275
Target:  5'- uCAGCgUCGCGCCGGgccaggUGCucaacauCGUCGGCa -3'
miRNA:   3'- cGUCG-AGCGCGGCCa-----GCG-------GCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 21474 0.78 0.054272
Target:  5'- cGCAGCcCGCGCCGGUCggGCCG--GGCUg -3'
miRNA:   3'- -CGUCGaGCGCGGCCAG--CGGCagCCGG- -5'
12771 3' -62.7 NC_003387.1 + 42916 0.75 0.091057
Target:  5'- cGCAGCcugcaGCGCCGGUCGCUcgacaacaugGUCGcGCUc -3'
miRNA:   3'- -CGUCGag---CGCGGCCAGCGG----------CAGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.