miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 3' -62.7 NC_003387.1 + 52527 0.77 0.067568
Target:  5'- cGCGGCaaugUCGCggGCCGaGUCgagcaccgucuuGCCGUCGGCCa -3'
miRNA:   3'- -CGUCG----AGCG--CGGC-CAG------------CGGCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 52253 1.13 0.000111
Target:  5'- aGCAGCUCGCGCCGGUCGCCGUCGGCCg -3'
miRNA:   3'- -CGUCGAGCGCGGCCAGCGGCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 52096 0.67 0.295603
Target:  5'- cGCGGCggCGaCGCUGcccUCGCCcugcUCGGCCu -3'
miRNA:   3'- -CGUCGa-GC-GCGGCc--AGCGGc---AGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 51894 0.66 0.363597
Target:  5'- uGUGGC-CGCGUacaGGcCGUCGUCGcGCUu -3'
miRNA:   3'- -CGUCGaGCGCGg--CCaGCGGCAGC-CGG- -5'
12771 3' -62.7 NC_003387.1 + 51505 0.69 0.23792
Target:  5'- aGCAGCUCGacgaGCCaugcccCGUCGaCGGCCa -3'
miRNA:   3'- -CGUCGAGCg---CGGcca---GCGGCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 51424 0.68 0.280562
Target:  5'- uGCGGCgccgccucgaacUGCGCCGGUCgaacGCCGcgCaGCCg -3'
miRNA:   3'- -CGUCGa-----------GCGCGGCCAG----CGGCa-GcCGG- -5'
12771 3' -62.7 NC_003387.1 + 51336 0.68 0.275246
Target:  5'- gGUAGCUCggauucaucuuGCGCCacugcgagcGGUCGUCGgggUCGGCg -3'
miRNA:   3'- -CGUCGAG-----------CGCGG---------CCAGCGGC---AGCCGg -5'
12771 3' -62.7 NC_003387.1 + 51106 0.66 0.363597
Target:  5'- cCAGCaCGCGCCGaccgaaaUCGCCa--GGCCg -3'
miRNA:   3'- cGUCGaGCGCGGCc------AGCGGcagCCGG- -5'
12771 3' -62.7 NC_003387.1 + 50688 0.72 0.135746
Target:  5'- cCAGCUCgGCGaCGG-CgGCCGUCGGCg -3'
miRNA:   3'- cGUCGAG-CGCgGCCaG-CGGCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 49800 0.66 0.380107
Target:  5'- cGCAGUUCGacgagaGCC--UCGCCcG-CGGCCu -3'
miRNA:   3'- -CGUCGAGCg-----CGGccAGCGG-CaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 49619 0.67 0.302644
Target:  5'- gGCGGCccCGauuuacgaGCCGGUCGgCGagcUUGGCCc -3'
miRNA:   3'- -CGUCGa-GCg-------CGGCCAGCgGC---AGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 49524 0.66 0.347591
Target:  5'- gGCgAGCUUGCGCUgcuGGUUGgccuCCG-CGGCUg -3'
miRNA:   3'- -CG-UCGAGCGCGG---CCAGC----GGCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 49440 0.72 0.135746
Target:  5'- gGCGGC-CGUGUCGGggUCGUCGUccauuucggCGGCCa -3'
miRNA:   3'- -CGUCGaGCGCGGCC--AGCGGCA---------GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 49166 0.67 0.302644
Target:  5'- cCAGCgCGCaGgCGGUCGCgcaGgcggCGGCCg -3'
miRNA:   3'- cGUCGaGCG-CgGCCAGCGg--Ca---GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 48786 0.77 0.065748
Target:  5'- cCAGCUCGcCGCUGaUCGCCGcggcggCGGCCa -3'
miRNA:   3'- cGUCGAGC-GCGGCcAGCGGCa-----GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 48705 0.66 0.347591
Target:  5'- cGCGGUUCuuuuGgGCCuGGcugaUCGCCGccaCGGCCg -3'
miRNA:   3'- -CGUCGAG----CgCGG-CC----AGCGGCa--GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 48432 0.66 0.35553
Target:  5'- cGCGGU--GCGCUGcUCGCCcG-CGGCCu -3'
miRNA:   3'- -CGUCGagCGCGGCcAGCGG-CaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 48378 0.66 0.380107
Target:  5'- cCAGUcgcuuacgUUGCGCUGGUgCGCCuucUCGGCg -3'
miRNA:   3'- cGUCG--------AGCGCGGCCA-GCGGc--AGCCGg -5'
12771 3' -62.7 NC_003387.1 + 48258 0.68 0.275246
Target:  5'- cGCGGCgggCuCGgCGGUCGgC-UCGGCCu -3'
miRNA:   3'- -CGUCGa--GcGCgGCCAGCgGcAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 48230 0.73 0.115851
Target:  5'- cGCAcgaucGUgUCGCGcCCGGUCgGCCG-CGGCCa -3'
miRNA:   3'- -CGU-----CG-AGCGC-GGCCAG-CGGCaGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.