miRNA display CGI


Results 41 - 60 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 3' -62.7 NC_003387.1 + 49524 0.66 0.347591
Target:  5'- gGCgAGCUUGCGCUgcuGGUUGgccuCCG-CGGCUg -3'
miRNA:   3'- -CG-UCGAGCGCGG---CCAGC----GGCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 9283 0.66 0.347591
Target:  5'- aGCAGCUUGaccuuggccuCGUCGaacUUGCUGUCGGCg -3'
miRNA:   3'- -CGUCGAGC----------GCGGCc--AGCGGCAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 4366 0.66 0.346804
Target:  5'- -uGGCUCGaCGCCGaGUucguccacaacaaCGCCGUCGaCUa -3'
miRNA:   3'- cgUCGAGC-GCGGC-CA-------------GCGGCAGCcGG- -5'
12771 3' -62.7 NC_003387.1 + 36374 0.66 0.339779
Target:  5'- aCGGCgcaGCGauuuuggaGGUCGCCG-CGGUCa -3'
miRNA:   3'- cGUCGag-CGCgg------CCAGCGGCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 3876 0.66 0.339779
Target:  5'- aGCuGUUUGUGCCGGaaccggCGCCG-CuGCCc -3'
miRNA:   3'- -CGuCGAGCGCGGCCa-----GCGGCaGcCGG- -5'
12771 3' -62.7 NC_003387.1 + 44509 0.66 0.339779
Target:  5'- gGCAGUugcgucuguUCGUGCCGGgccgcccggCGCCGcagGGCUc -3'
miRNA:   3'- -CGUCG---------AGCGCGGCCa--------GCGGCag-CCGG- -5'
12771 3' -62.7 NC_003387.1 + 43880 0.66 0.339779
Target:  5'- -gGGCcaUCGCGCaCGGUgagcCGCuCGUCgauaGGCCa -3'
miRNA:   3'- cgUCG--AGCGCG-GCCA----GCG-GCAG----CCGG- -5'
12771 3' -62.7 NC_003387.1 + 19175 0.66 0.339779
Target:  5'- cGCGGC-C-CGCaCGGUCGCUaaCGGCa -3'
miRNA:   3'- -CGUCGaGcGCG-GCCAGCGGcaGCCGg -5'
12771 3' -62.7 NC_003387.1 + 32536 0.66 0.339779
Target:  5'- cGUAGUUCaCGgCGG-CGCCGUcCGGUg -3'
miRNA:   3'- -CGUCGAGcGCgGCCaGCGGCA-GCCGg -5'
12771 3' -62.7 NC_003387.1 + 42161 0.66 0.339779
Target:  5'- uCAGCUugaacUGCGCCGaGUCGaucugCGUcagaCGGCCg -3'
miRNA:   3'- cGUCGA-----GCGCGGC-CAGCg----GCA----GCCGG- -5'
12771 3' -62.7 NC_003387.1 + 44382 0.66 0.339779
Target:  5'- aGCGGCa--CGUCGGggUCGUCGaggUCGGCCg -3'
miRNA:   3'- -CGUCGagcGCGGCC--AGCGGC---AGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 27300 0.67 0.332095
Target:  5'- gGCGGCccUUGagaGCCGcGUCGCCGUgaucGCCg -3'
miRNA:   3'- -CGUCG--AGCg--CGGC-CAGCGGCAgc--CGG- -5'
12771 3' -62.7 NC_003387.1 + 39223 0.67 0.332095
Target:  5'- gGCAGUgggaGCGgguaCCGG-CGCCGggcgaGGCCg -3'
miRNA:   3'- -CGUCGag--CGC----GGCCaGCGGCag---CCGG- -5'
12771 3' -62.7 NC_003387.1 + 7757 0.67 0.332095
Target:  5'- aGCGGCgaUCGCgGCCuga-GCCG-CGGCCu -3'
miRNA:   3'- -CGUCG--AGCG-CGGccagCGGCaGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 13504 0.67 0.332095
Target:  5'- gGCGGgUU-CGCCGGuggagUCGCugacagCGUCGGCCu -3'
miRNA:   3'- -CGUCgAGcGCGGCC-----AGCG------GCAGCCGG- -5'
12771 3' -62.7 NC_003387.1 + 45955 0.67 0.332095
Target:  5'- aCGGCcCGCGCaagggcgaGGcgugCGCUGUgGGCCu -3'
miRNA:   3'- cGUCGaGCGCGg-------CCa---GCGGCAgCCGG- -5'
12771 3' -62.7 NC_003387.1 + 41169 0.67 0.332095
Target:  5'- -gGGCgagUGCgGCCGGUCGCaccguuUCGGCg -3'
miRNA:   3'- cgUCGa--GCG-CGGCCAGCGgc----AGCCGg -5'
12771 3' -62.7 NC_003387.1 + 44965 0.67 0.332095
Target:  5'- cGCGGCUCaG-GCCGcGaUCGCCG-CuGCCg -3'
miRNA:   3'- -CGUCGAG-CgCGGC-C-AGCGGCaGcCGG- -5'
12771 3' -62.7 NC_003387.1 + 11006 0.67 0.332095
Target:  5'- uCGGC-CGUGCCccGGcCGCCuucGUCGGCg -3'
miRNA:   3'- cGUCGaGCGCGG--CCaGCGG---CAGCCGg -5'
12771 3' -62.7 NC_003387.1 + 6824 0.67 0.332095
Target:  5'- uGCAGaUCGgGCggcaGGUCGaucgcCCGcUCGGCCg -3'
miRNA:   3'- -CGUCgAGCgCGg---CCAGC-----GGC-AGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.