Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12772 | 3' | -57.5 | NC_003387.1 | + | 698 | 0.67 | 0.491375 |
Target: 5'- -cGCGCCa---CGUCAuugCGCCGCAAg -3' miRNA: 3'- gaCGCGGacucGCAGUua-GCGGCGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 24623 | 0.66 | 0.498645 |
Target: 5'- -cGCGCCUGGGCGacccgacgcaccUCGcccugcugcgcgagGUCGCCaGCGc -3' miRNA: 3'- gaCGCGGACUCGC------------AGU--------------UAGCGG-CGUu -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 10113 | 0.66 | 0.54427 |
Target: 5'- aUGCGCgCUGAGCG-CGaaaagcGUUGgCGCGAa -3' miRNA: 3'- gACGCG-GACUCGCaGU------UAGCgGCGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 49494 | 0.69 | 0.358248 |
Target: 5'- gUGCGCCcGcccGGCGUCGAcgUGUCGCAAu -3' miRNA: 3'- gACGCGGaC---UCGCAGUUa-GCGGCGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 17179 | 0.66 | 0.512271 |
Target: 5'- -cGcCGCCUGGGCGgCGA-CGgCGCGAa -3' miRNA: 3'- gaC-GCGGACUCGCaGUUaGCgGCGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 51440 | 0.66 | 0.522857 |
Target: 5'- aCUGCGCCg----GUCGAaCGCCGCGc -3' miRNA: 3'- -GACGCGGacucgCAGUUaGCGGCGUu -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 29364 | 0.66 | 0.54427 |
Target: 5'- -gGCGaCCUGAcCGUCAGcggCGCCGguGa -3' miRNA: 3'- gaCGC-GGACUcGCAGUUa--GCGGCguU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 50706 | 0.67 | 0.491375 |
Target: 5'- aUGCGCCUGGGCGcgCAcaagGUCGa-GCGu -3' miRNA: 3'- gACGCGGACUCGCa-GU----UAGCggCGUu -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 42916 | 0.66 | 0.522857 |
Target: 5'- -cGCaGCCUGcAGCGcCGGUCGCuCGaCAAc -3' miRNA: 3'- gaCG-CGGAC-UCGCaGUUAGCG-GC-GUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 28945 | 0.66 | 0.512271 |
Target: 5'- --aCGCCUGAGUGUCGuguagcuaacCGCCGgCAAa -3' miRNA: 3'- gacGCGGACUCGCAGUua--------GCGGC-GUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 1862 | 0.66 | 0.54427 |
Target: 5'- -gGCGaCCcaaucGAGCGUCuugCGCUGCAGg -3' miRNA: 3'- gaCGC-GGa----CUCGCAGuuaGCGGCGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 21037 | 0.72 | 0.251842 |
Target: 5'- gCUaCGCCUGAccagucgGCGUCGAaCGCCGCGu -3' miRNA: 3'- -GAcGCGGACU-------CGCAGUUaGCGGCGUu -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 20196 | 0.73 | 0.199045 |
Target: 5'- gCUGCGCCUcgcacggccGGGCGUgcacgcagcggCAGUCGUCGCAc -3' miRNA: 3'- -GACGCGGA---------CUCGCA-----------GUUAGCGGCGUu -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 47586 | 0.66 | 0.533525 |
Target: 5'- -gGCGCC-GAGCGcCccUCGUCGCGu -3' miRNA: 3'- gaCGCGGaCUCGCaGuuAGCGGCGUu -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 52119 | 0.96 | 0.004165 |
Target: 5'- cCUGCucgGCCUGAGCGUCAAUCGCCGCAAu -3' miRNA: 3'- -GACG---CGGACUCGCAGUUAGCGGCGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 48707 | 0.66 | 0.522857 |
Target: 5'- -cGCGCUUG-GCGuugUCGAgcaccgugCGCCGCGAc -3' miRNA: 3'- gaCGCGGACuCGC---AGUUa-------GCGGCGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 335 | 0.67 | 0.450832 |
Target: 5'- ---gGCCUGGuaGUCGAuuggcUCGCCGCAAa -3' miRNA: 3'- gacgCGGACUcgCAGUU-----AGCGGCGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 24517 | 0.67 | 0.460799 |
Target: 5'- gCUGCGCUUgccGAGCugcaGGUCGCCGCc- -3' miRNA: 3'- -GACGCGGA---CUCGcag-UUAGCGGCGuu -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 37794 | 0.66 | 0.501775 |
Target: 5'- aUGCGCCgcuGCGcCGGUaGCCGCGc -3' miRNA: 3'- gACGCGGacuCGCaGUUAgCGGCGUu -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 27330 | 0.67 | 0.481075 |
Target: 5'- -cGCGCCUucuCGUCGAgcaGCCGCAGc -3' miRNA: 3'- gaCGCGGAcucGCAGUUag-CGGCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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