Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12772 | 3' | -57.5 | NC_003387.1 | + | 24865 | 0.69 | 0.366888 |
Target: 5'- -cGCGCC--GGUGUCGAUCGUgGCGc -3' miRNA: 3'- gaCGCGGacUCGCAGUUAGCGgCGUu -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 25829 | 0.66 | 0.533525 |
Target: 5'- -gGCgGCCUGGGCGguggccugcUCGGUgGCgGCAAg -3' miRNA: 3'- gaCG-CGGACUCGC---------AGUUAgCGgCGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 26118 | 0.75 | 0.151475 |
Target: 5'- cCUGCGCCaGGucggcGCGUCcGUCGCCGCu- -3' miRNA: 3'- -GACGCGGaCU-----CGCAGuUAGCGGCGuu -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 27330 | 0.67 | 0.481075 |
Target: 5'- -cGCGCCUucuCGUCGAgcaGCCGCAGc -3' miRNA: 3'- gaCGCGGAcucGCAGUUag-CGGCGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 28945 | 0.66 | 0.512271 |
Target: 5'- --aCGCCUGAGUGUCGuguagcuaacCGCCGgCAAa -3' miRNA: 3'- gacGCGGACUCGCAGUua--------GCGGC-GUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 29005 | 0.68 | 0.431259 |
Target: 5'- cCUGCGCC-GAGuCGU---UCGCCGCc- -3' miRNA: 3'- -GACGCGGaCUC-GCAguuAGCGGCGuu -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 29364 | 0.66 | 0.54427 |
Target: 5'- -gGCGaCCUGAcCGUCAGcggCGCCGguGa -3' miRNA: 3'- gaCGC-GGACUcGCAGUUa--GCGGCguU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 29617 | 0.66 | 0.555085 |
Target: 5'- -cGCGCC-GGGCGcCAGcggcUUGCCGUAc -3' miRNA: 3'- gaCGCGGaCUCGCaGUU----AGCGGCGUu -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 29877 | 0.66 | 0.522857 |
Target: 5'- gUGCGCCuUGcGCGcCGAUCGCguuggcgauCGCGAg -3' miRNA: 3'- gACGCGG-ACuCGCaGUUAGCG---------GCGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 30124 | 0.69 | 0.358248 |
Target: 5'- -aGgGCCUGAGCuUCGaccGUgGCCGCAc -3' miRNA: 3'- gaCgCGGACUCGcAGU---UAgCGGCGUu -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 32588 | 0.66 | 0.555085 |
Target: 5'- gCUGCucauCCUGA-CGUCGAuccugcucgggcUCGCCGCGGg -3' miRNA: 3'- -GACGc---GGACUcGCAGUU------------AGCGGCGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 35802 | 0.67 | 0.470882 |
Target: 5'- gCUGUGCCUcGGCG-CcGUCGgCGCGAu -3' miRNA: 3'- -GACGCGGAcUCGCaGuUAGCgGCGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 36211 | 0.71 | 0.265874 |
Target: 5'- -gGCGCCUcGGCGUaaucgaGGUCGUCGCAu -3' miRNA: 3'- gaCGCGGAcUCGCAg-----UUAGCGGCGUu -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 36752 | 0.74 | 0.164546 |
Target: 5'- -aGCGCCUGGGCGUCAc-CGUCaGCGAc -3' miRNA: 3'- gaCGCGGACUCGCAGUuaGCGG-CGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 37285 | 0.67 | 0.491375 |
Target: 5'- -gGCGCCUGGcGCGcUCG-UCGgCGCGGu -3' miRNA: 3'- gaCGCGGACU-CGC-AGUuAGCgGCGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 37789 | 0.73 | 0.215671 |
Target: 5'- -cGCGCCUGGGCGcagcacccgCGGUCGCaGCAGc -3' miRNA: 3'- gaCGCGGACUCGCa--------GUUAGCGgCGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 37794 | 0.66 | 0.501775 |
Target: 5'- aUGCGCCgcuGCGcCGGUaGCCGCGc -3' miRNA: 3'- gACGCGGacuCGCaGUUAgCGGCGUu -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 38531 | 0.66 | 0.555085 |
Target: 5'- -aGCGCCgacGGCGUCAuggUGgCGCAGa -3' miRNA: 3'- gaCGCGGac-UCGCAGUua-GCgGCGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 39401 | 0.7 | 0.294342 |
Target: 5'- gUGCGCCUGGcgcgcgaguGgGUCGAggugaccgggCGCCGCAAg -3' miRNA: 3'- gACGCGGACU---------CgCAGUUa---------GCGGCGUU- -5' |
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12772 | 3' | -57.5 | NC_003387.1 | + | 41332 | 0.7 | 0.333191 |
Target: 5'- -cGCgGCCaGcguGGCGcCGAUCGCCGCAAa -3' miRNA: 3'- gaCG-CGGaC---UCGCaGUUAGCGGCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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