miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12772 3' -57.5 NC_003387.1 + 335 0.67 0.450832
Target:  5'- ---gGCCUGGuaGUCGAuuggcUCGCCGCAAa -3'
miRNA:   3'- gacgCGGACUcgCAGUU-----AGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 698 0.67 0.491375
Target:  5'- -cGCGCCa---CGUCAuugCGCCGCAAg -3'
miRNA:   3'- gaCGCGGacucGCAGUua-GCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 1843 0.7 0.333191
Target:  5'- gCUGCgGCCUGuuugagaacGGCGUCAA-CGCCGaCAc -3'
miRNA:   3'- -GACG-CGGAC---------UCGCAGUUaGCGGC-GUu -5'
12772 3' -57.5 NC_003387.1 + 1862 0.66 0.54427
Target:  5'- -gGCGaCCcaaucGAGCGUCuugCGCUGCAGg -3'
miRNA:   3'- gaCGC-GGa----CUCGCAGuuaGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 4558 0.66 0.512271
Target:  5'- cCUGCGCCUGcGCGaccgcgcgggccUCGGUggcgCGCUGCGc -3'
miRNA:   3'- -GACGCGGACuCGC------------AGUUA----GCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 5844 0.68 0.440984
Target:  5'- gCUGCGCCgcaGGUGgggg-CGCCGCAAc -3'
miRNA:   3'- -GACGCGGac-UCGCaguuaGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 9483 0.66 0.537814
Target:  5'- -gGCGCCgaacagGAacggcaacacgugguGCGUCAccucgccgAUCGCCGCGu -3'
miRNA:   3'- gaCGCGGa-----CU---------------CGCAGU--------UAGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 10113 0.66 0.54427
Target:  5'- aUGCGCgCUGAGCG-CGaaaagcGUUGgCGCGAa -3'
miRNA:   3'- gACGCG-GACUCGCaGU------UAGCgGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 11686 0.67 0.460799
Target:  5'- --uCGCgUGGGUGUCAauGUCGCCGuCGAc -3'
miRNA:   3'- gacGCGgACUCGCAGU--UAGCGGC-GUU- -5'
12772 3' -57.5 NC_003387.1 + 12766 0.66 0.543192
Target:  5'- -cGCGaCCUc-GCGcucguacUCGAUCGCCGCAAu -3'
miRNA:   3'- gaCGC-GGAcuCGC-------AGUUAGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 15123 0.7 0.294342
Target:  5'- -gGCGCCUGAcccugugcGCGaccCGAUUGCCGCGu -3'
miRNA:   3'- gaCGCGGACU--------CGCa--GUUAGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 16271 0.7 0.333191
Target:  5'- gCUGCGCCUGGGCGagcugcUCGcgCGUCaCGAa -3'
miRNA:   3'- -GACGCGGACUCGC------AGUuaGCGGcGUU- -5'
12772 3' -57.5 NC_003387.1 + 17179 0.66 0.512271
Target:  5'- -cGcCGCCUGGGCGgCGA-CGgCGCGAa -3'
miRNA:   3'- gaC-GCGGACUCGCaGUUaGCgGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 19338 0.66 0.512271
Target:  5'- aUGUGCCUGcggcGGCGUCccaucCGcCCGCGAu -3'
miRNA:   3'- gACGCGGAC----UCGCAGuua--GC-GGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 19674 0.66 0.533525
Target:  5'- gUGCaCCUGGGCGUCGAcggcUCGUucgacgccuCGCAGc -3'
miRNA:   3'- gACGcGGACUCGCAGUU----AGCG---------GCGUU- -5'
12772 3' -57.5 NC_003387.1 + 20196 0.73 0.199045
Target:  5'- gCUGCGCCUcgcacggccGGGCGUgcacgcagcggCAGUCGUCGCAc -3'
miRNA:   3'- -GACGCGGA---------CUCGCA-----------GUUAGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 21037 0.72 0.251842
Target:  5'- gCUaCGCCUGAccagucgGCGUCGAaCGCCGCGu -3'
miRNA:   3'- -GAcGCGGACU-------CGCAGUUaGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 21637 0.7 0.294342
Target:  5'- -gGCGUC-GAGCGUCAgcucGUCGaCCGCGg -3'
miRNA:   3'- gaCGCGGaCUCGCAGU----UAGC-GGCGUu -5'
12772 3' -57.5 NC_003387.1 + 24517 0.67 0.460799
Target:  5'- gCUGCGCUUgccGAGCugcaGGUCGCCGCc- -3'
miRNA:   3'- -GACGCGGA---CUCGcag-UUAGCGGCGuu -5'
12772 3' -57.5 NC_003387.1 + 24623 0.66 0.498645
Target:  5'- -cGCGCCUGGGCGacccgacgcaccUCGcccugcugcgcgagGUCGCCaGCGc -3'
miRNA:   3'- gaCGCGGACUCGC------------AGU--------------UAGCGG-CGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.