miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12772 3' -57.5 NC_003387.1 + 52260 0.66 0.555085
Target:  5'- -cGCGCCgGucGcCGUCGGcCGCCGCGg -3'
miRNA:   3'- gaCGCGGaCu-C-GCAGUUaGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 52119 0.96 0.004165
Target:  5'- cCUGCucgGCCUGAGCGUCAAUCGCCGCAAu -3'
miRNA:   3'- -GACG---CGGACUCGCAGUUAGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 51787 0.76 0.128128
Target:  5'- -gGUGgCUGGGCGUCGAUCGCCcCGAg -3'
miRNA:   3'- gaCGCgGACUCGCAGUUAGCGGcGUU- -5'
12772 3' -57.5 NC_003387.1 + 51440 0.66 0.522857
Target:  5'- aCUGCGCCg----GUCGAaCGCCGCGc -3'
miRNA:   3'- -GACGCGGacucgCAGUUaGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 50706 0.67 0.491375
Target:  5'- aUGCGCCUGGGCGcgCAcaagGUCGa-GCGu -3'
miRNA:   3'- gACGCGGACUCGCa-GU----UAGCggCGUu -5'
12772 3' -57.5 NC_003387.1 + 50120 0.68 0.393658
Target:  5'- -aGCGCCUG-GUcaCGAUCGCCGUu- -3'
miRNA:   3'- gaCGCGGACuCGcaGUUAGCGGCGuu -5'
12772 3' -57.5 NC_003387.1 + 49494 0.69 0.358248
Target:  5'- gUGCGCCcGcccGGCGUCGAcgUGUCGCAAu -3'
miRNA:   3'- gACGCGGaC---UCGCAGUUa-GCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 48707 0.66 0.522857
Target:  5'- -cGCGCUUG-GCGuugUCGAgcaccgugCGCCGCGAc -3'
miRNA:   3'- gaCGCGGACuCGC---AGUUa-------GCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 47825 0.68 0.440984
Target:  5'- uUGCGUUUGAGCauguagccGUUcGUCGCCGCc- -3'
miRNA:   3'- gACGCGGACUCG--------CAGuUAGCGGCGuu -5'
12772 3' -57.5 NC_003387.1 + 47586 0.66 0.533525
Target:  5'- -gGCGCC-GAGCGcCccUCGUCGCGu -3'
miRNA:   3'- gaCGCGGaCUCGCaGuuAGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 43683 0.67 0.481075
Target:  5'- -cGCGauCCUG-GCGUgGAUCGCCGaCGg -3'
miRNA:   3'- gaCGC--GGACuCGCAgUUAGCGGC-GUu -5'
12772 3' -57.5 NC_003387.1 + 42916 0.66 0.522857
Target:  5'- -cGCaGCCUGcAGCGcCGGUCGCuCGaCAAc -3'
miRNA:   3'- gaCG-CGGAC-UCGCaGUUAGCG-GC-GUU- -5'
12772 3' -57.5 NC_003387.1 + 42039 0.69 0.349751
Target:  5'- -aGCGCCaGGGCGcCAagAUCGaCCGCGg -3'
miRNA:   3'- gaCGCGGaCUCGCaGU--UAGC-GGCGUu -5'
12772 3' -57.5 NC_003387.1 + 41668 0.68 0.402858
Target:  5'- aCUGCGaCCUGugguucGGCGUCAacccgacccggcGUCGCgGCGc -3'
miRNA:   3'- -GACGC-GGAC------UCGCAGU------------UAGCGgCGUu -5'
12772 3' -57.5 NC_003387.1 + 41332 0.7 0.333191
Target:  5'- -cGCgGCCaGcguGGCGcCGAUCGCCGCAAa -3'
miRNA:   3'- gaCG-CGGaC---UCGCaGUUAGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 39401 0.7 0.294342
Target:  5'- gUGCGCCUGGcgcgcgaguGgGUCGAggugaccgggCGCCGCAAg -3'
miRNA:   3'- gACGCGGACU---------CgCAGUUa---------GCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 38531 0.66 0.555085
Target:  5'- -aGCGCCgacGGCGUCAuggUGgCGCAGa -3'
miRNA:   3'- gaCGCGGac-UCGCAGUua-GCgGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 37794 0.66 0.501775
Target:  5'- aUGCGCCgcuGCGcCGGUaGCCGCGc -3'
miRNA:   3'- gACGCGGacuCGCaGUUAgCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 37789 0.73 0.215671
Target:  5'- -cGCGCCUGGGCGcagcacccgCGGUCGCaGCAGc -3'
miRNA:   3'- gaCGCGGACUCGCa--------GUUAGCGgCGUU- -5'
12772 3' -57.5 NC_003387.1 + 37285 0.67 0.491375
Target:  5'- -gGCGCCUGGcGCGcUCG-UCGgCGCGGu -3'
miRNA:   3'- gaCGCGGACU-CGC-AGUuAGCgGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.