miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12772 3' -57.5 NC_003387.1 + 698 0.67 0.491375
Target:  5'- -cGCGCCa---CGUCAuugCGCCGCAAg -3'
miRNA:   3'- gaCGCGGacucGCAGUua-GCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 24623 0.66 0.498645
Target:  5'- -cGCGCCUGGGCGacccgacgcaccUCGcccugcugcgcgagGUCGCCaGCGc -3'
miRNA:   3'- gaCGCGGACUCGC------------AGU--------------UAGCGG-CGUu -5'
12772 3' -57.5 NC_003387.1 + 10113 0.66 0.54427
Target:  5'- aUGCGCgCUGAGCG-CGaaaagcGUUGgCGCGAa -3'
miRNA:   3'- gACGCG-GACUCGCaGU------UAGCgGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 49494 0.69 0.358248
Target:  5'- gUGCGCCcGcccGGCGUCGAcgUGUCGCAAu -3'
miRNA:   3'- gACGCGGaC---UCGCAGUUa-GCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 17179 0.66 0.512271
Target:  5'- -cGcCGCCUGGGCGgCGA-CGgCGCGAa -3'
miRNA:   3'- gaC-GCGGACUCGCaGUUaGCgGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 51440 0.66 0.522857
Target:  5'- aCUGCGCCg----GUCGAaCGCCGCGc -3'
miRNA:   3'- -GACGCGGacucgCAGUUaGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 29364 0.66 0.54427
Target:  5'- -gGCGaCCUGAcCGUCAGcggCGCCGguGa -3'
miRNA:   3'- gaCGC-GGACUcGCAGUUa--GCGGCguU- -5'
12772 3' -57.5 NC_003387.1 + 50706 0.67 0.491375
Target:  5'- aUGCGCCUGGGCGcgCAcaagGUCGa-GCGu -3'
miRNA:   3'- gACGCGGACUCGCa-GU----UAGCggCGUu -5'
12772 3' -57.5 NC_003387.1 + 42916 0.66 0.522857
Target:  5'- -cGCaGCCUGcAGCGcCGGUCGCuCGaCAAc -3'
miRNA:   3'- gaCG-CGGAC-UCGCaGUUAGCG-GC-GUU- -5'
12772 3' -57.5 NC_003387.1 + 28945 0.66 0.512271
Target:  5'- --aCGCCUGAGUGUCGuguagcuaacCGCCGgCAAa -3'
miRNA:   3'- gacGCGGACUCGCAGUua--------GCGGC-GUU- -5'
12772 3' -57.5 NC_003387.1 + 1862 0.66 0.54427
Target:  5'- -gGCGaCCcaaucGAGCGUCuugCGCUGCAGg -3'
miRNA:   3'- gaCGC-GGa----CUCGCAGuuaGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 21037 0.72 0.251842
Target:  5'- gCUaCGCCUGAccagucgGCGUCGAaCGCCGCGu -3'
miRNA:   3'- -GAcGCGGACU-------CGCAGUUaGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 20196 0.73 0.199045
Target:  5'- gCUGCGCCUcgcacggccGGGCGUgcacgcagcggCAGUCGUCGCAc -3'
miRNA:   3'- -GACGCGGA---------CUCGCA-----------GUUAGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 47586 0.66 0.533525
Target:  5'- -gGCGCC-GAGCGcCccUCGUCGCGu -3'
miRNA:   3'- gaCGCGGaCUCGCaGuuAGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 52119 0.96 0.004165
Target:  5'- cCUGCucgGCCUGAGCGUCAAUCGCCGCAAu -3'
miRNA:   3'- -GACG---CGGACUCGCAGUUAGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 48707 0.66 0.522857
Target:  5'- -cGCGCUUG-GCGuugUCGAgcaccgugCGCCGCGAc -3'
miRNA:   3'- gaCGCGGACuCGC---AGUUa-------GCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 335 0.67 0.450832
Target:  5'- ---gGCCUGGuaGUCGAuuggcUCGCCGCAAa -3'
miRNA:   3'- gacgCGGACUcgCAGUU-----AGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 24517 0.67 0.460799
Target:  5'- gCUGCGCUUgccGAGCugcaGGUCGCCGCc- -3'
miRNA:   3'- -GACGCGGA---CUCGcag-UUAGCGGCGuu -5'
12772 3' -57.5 NC_003387.1 + 37794 0.66 0.501775
Target:  5'- aUGCGCCgcuGCGcCGGUaGCCGCGc -3'
miRNA:   3'- gACGCGGacuCGCaGUUAgCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 27330 0.67 0.481075
Target:  5'- -cGCGCCUucuCGUCGAgcaGCCGCAGc -3'
miRNA:   3'- gaCGCGGAcucGCAGUUag-CGGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.