miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12772 3' -57.5 NC_003387.1 + 27330 0.67 0.481075
Target:  5'- -cGCGCCUucuCGUCGAgcaGCCGCAGc -3'
miRNA:   3'- gaCGCGGAcucGCAGUUag-CGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 11686 0.67 0.460799
Target:  5'- --uCGCgUGGGUGUCAauGUCGCCGuCGAc -3'
miRNA:   3'- gacGCGgACUCGCAGU--UAGCGGC-GUU- -5'
12772 3' -57.5 NC_003387.1 + 52119 0.96 0.004165
Target:  5'- cCUGCucgGCCUGAGCGUCAAUCGCCGCAAu -3'
miRNA:   3'- -GACG---CGGACUCGCAGUUAGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 20196 0.73 0.199045
Target:  5'- gCUGCGCCUcgcacggccGGGCGUgcacgcagcggCAGUCGUCGCAc -3'
miRNA:   3'- -GACGCGGA---------CUCGCA-----------GUUAGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 16271 0.7 0.333191
Target:  5'- gCUGCGCCUGGGCGagcugcUCGcgCGUCaCGAa -3'
miRNA:   3'- -GACGCGGACUCGC------AGUuaGCGGcGUU- -5'
12772 3' -57.5 NC_003387.1 + 41332 0.7 0.333191
Target:  5'- -cGCgGCCaGcguGGCGcCGAUCGCCGCAAa -3'
miRNA:   3'- gaCG-CGGaC---UCGCaGUUAGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 21037 0.72 0.251842
Target:  5'- gCUaCGCCUGAccagucgGCGUCGAaCGCCGCGu -3'
miRNA:   3'- -GAcGCGGACU-------CGCAGUUaGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 24865 0.69 0.366888
Target:  5'- -cGCGCC--GGUGUCGAUCGUgGCGc -3'
miRNA:   3'- gaCGCGGacUCGCAGUUAGCGgCGUu -5'
12772 3' -57.5 NC_003387.1 + 29005 0.68 0.431259
Target:  5'- cCUGCGCC-GAGuCGU---UCGCCGCc- -3'
miRNA:   3'- -GACGCGGaCUC-GCAguuAGCGGCGuu -5'
12772 3' -57.5 NC_003387.1 + 5844 0.68 0.440984
Target:  5'- gCUGCGCCgcaGGUGgggg-CGCCGCAAc -3'
miRNA:   3'- -GACGCGGac-UCGCaguuaGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 47825 0.68 0.440984
Target:  5'- uUGCGUUUGAGCauguagccGUUcGUCGCCGCc- -3'
miRNA:   3'- gACGCGGACUCG--------CAGuUAGCGGCGuu -5'
12772 3' -57.5 NC_003387.1 + 335 0.67 0.450832
Target:  5'- ---gGCCUGGuaGUCGAuuggcUCGCCGCAAa -3'
miRNA:   3'- gacgCGGACUcgCAGUU-----AGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 24517 0.67 0.460799
Target:  5'- gCUGCGCUUgccGAGCugcaGGUCGCCGCc- -3'
miRNA:   3'- -GACGCGGA---CUCGcag-UUAGCGGCGuu -5'
12772 3' -57.5 NC_003387.1 + 52260 0.66 0.555085
Target:  5'- -cGCGCCgGucGcCGUCGGcCGCCGCGg -3'
miRNA:   3'- gaCGCGGaCu-C-GCAGUUaGCGGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.