miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12772 3' -57.5 NC_003387.1 + 16271 0.7 0.333191
Target:  5'- gCUGCGCCUGGGCGagcugcUCGcgCGUCaCGAa -3'
miRNA:   3'- -GACGCGGACUCGC------AGUuaGCGGcGUU- -5'
12772 3' -57.5 NC_003387.1 + 11686 0.67 0.460799
Target:  5'- --uCGCgUGGGUGUCAauGUCGCCGuCGAc -3'
miRNA:   3'- gacGCGgACUCGCAGU--UAGCGGC-GUU- -5'
12772 3' -57.5 NC_003387.1 + 24517 0.67 0.460799
Target:  5'- gCUGCGCUUgccGAGCugcaGGUCGCCGCc- -3'
miRNA:   3'- -GACGCGGA---CUCGcag-UUAGCGGCGuu -5'
12772 3' -57.5 NC_003387.1 + 335 0.67 0.450832
Target:  5'- ---gGCCUGGuaGUCGAuuggcUCGCCGCAAa -3'
miRNA:   3'- gacgCGGACUcgCAGUU-----AGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 47825 0.68 0.440984
Target:  5'- uUGCGUUUGAGCauguagccGUUcGUCGCCGCc- -3'
miRNA:   3'- gACGCGGACUCG--------CAGuUAGCGGCGuu -5'
12772 3' -57.5 NC_003387.1 + 5844 0.68 0.440984
Target:  5'- gCUGCGCCgcaGGUGgggg-CGCCGCAAc -3'
miRNA:   3'- -GACGCGGac-UCGCaguuaGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 29005 0.68 0.431259
Target:  5'- cCUGCGCC-GAGuCGU---UCGCCGCc- -3'
miRNA:   3'- -GACGCGGaCUC-GCAguuAGCGGCGuu -5'
12772 3' -57.5 NC_003387.1 + 24865 0.69 0.366888
Target:  5'- -cGCGCC--GGUGUCGAUCGUgGCGc -3'
miRNA:   3'- gaCGCGGacUCGCAGUUAGCGgCGUu -5'
12772 3' -57.5 NC_003387.1 + 41332 0.7 0.333191
Target:  5'- -cGCgGCCaGcguGGCGcCGAUCGCCGCAAa -3'
miRNA:   3'- gaCG-CGGaC---UCGCaGUUAGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 27330 0.67 0.481075
Target:  5'- -cGCGCCUucuCGUCGAgcaGCCGCAGc -3'
miRNA:   3'- gaCGCGGAcucGCAGUUag-CGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 37794 0.66 0.501775
Target:  5'- aUGCGCCgcuGCGcCGGUaGCCGCGc -3'
miRNA:   3'- gACGCGGacuCGCaGUUAgCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 4558 0.66 0.512271
Target:  5'- cCUGCGCCUGcGCGaccgcgcgggccUCGGUggcgCGCUGCGc -3'
miRNA:   3'- -GACGCGGACuCGC------------AGUUA----GCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 29617 0.66 0.555085
Target:  5'- -cGCGCC-GGGCGcCAGcggcUUGCCGUAc -3'
miRNA:   3'- gaCGCGGaCUCGCaGUU----AGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 1862 0.66 0.54427
Target:  5'- -gGCGaCCcaaucGAGCGUCuugCGCUGCAGg -3'
miRNA:   3'- gaCGC-GGa----CUCGCAGuuaGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 12766 0.66 0.543192
Target:  5'- -cGCGaCCUc-GCGcucguacUCGAUCGCCGCAAu -3'
miRNA:   3'- gaCGC-GGAcuCGC-------AGUUAGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 9483 0.66 0.537814
Target:  5'- -gGCGCCgaacagGAacggcaacacgugguGCGUCAccucgccgAUCGCCGCGu -3'
miRNA:   3'- gaCGCGGa-----CU---------------CGCAGU--------UAGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 47586 0.66 0.533525
Target:  5'- -gGCGCC-GAGCGcCccUCGUCGCGu -3'
miRNA:   3'- gaCGCGGaCUCGCaGuuAGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 48707 0.66 0.522857
Target:  5'- -cGCGCUUG-GCGuugUCGAgcaccgugCGCCGCGAc -3'
miRNA:   3'- gaCGCGGACuCGC---AGUUa-------GCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 29877 0.66 0.522857
Target:  5'- gUGCGCCuUGcGCGcCGAUCGCguuggcgauCGCGAg -3'
miRNA:   3'- gACGCGG-ACuCGCaGUUAGCG---------GCGUU- -5'
12772 3' -57.5 NC_003387.1 + 19338 0.66 0.512271
Target:  5'- aUGUGCCUGcggcGGCGUCccaucCGcCCGCGAu -3'
miRNA:   3'- gACGCGGAC----UCGCAGuua--GC-GGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.