miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12772 5' -59.5 NC_003387.1 + 17081 0.66 0.47836
Target:  5'- gGUCggCCAGugcccgccCGGCCGCCucgGCGggcuccUCGGGGCc -3'
miRNA:   3'- -UAGa-GGUU--------GUCGGCGG---CGC------AGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 41965 0.67 0.402005
Target:  5'- cUCguaCCGGCGaucGCgGCCGUGUCAGcGGUc -3'
miRNA:   3'- uAGa--GGUUGU---CGgCGGCGCAGUC-CCG- -5'
12772 5' -59.5 NC_003387.1 + 50596 0.67 0.402005
Target:  5'- -aCUCCAcguCGGCCGCUgggGCGUC--GGCg -3'
miRNA:   3'- uaGAGGUu--GUCGGCGG---CGCAGucCCG- -5'
12772 5' -59.5 NC_003387.1 + 16182 0.67 0.4011
Target:  5'- -cUUCCAAUAGgCGgCGUcggugcuGUCGGGGCu -3'
miRNA:   3'- uaGAGGUUGUCgGCgGCG-------CAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 12227 0.7 0.254594
Target:  5'- ---aCCGGCGGUCGCCaGCG-CAGcGGCg -3'
miRNA:   3'- uagaGGUUGUCGGCGG-CGCaGUC-CCG- -5'
12772 5' -59.5 NC_003387.1 + 52266 0.7 0.267764
Target:  5'- gGUCgCCGuCGGCCGCCGCGgc--GGCg -3'
miRNA:   3'- -UAGaGGUuGUCGGCGGCGCagucCCG- -5'
12772 5' -59.5 NC_003387.1 + 22985 0.69 0.310569
Target:  5'- --gUCCAGCucgcccgcguAGCUGCCGuCGUCGgccuGGGCg -3'
miRNA:   3'- uagAGGUUG----------UCGGCGGC-GCAGU----CCCG- -5'
12772 5' -59.5 NC_003387.1 + 31125 0.69 0.310569
Target:  5'- ---aCCAGCAG-CGCCGCGUCGGccucGCu -3'
miRNA:   3'- uagaGGUUGUCgGCGGCGCAGUCc---CG- -5'
12772 5' -59.5 NC_003387.1 + 22655 0.69 0.31819
Target:  5'- cUCgccCCGGCGGCCGUcagggCGCGcUCGuGGGCg -3'
miRNA:   3'- uAGa--GGUUGUCGGCG-----GCGC-AGU-CCCG- -5'
12772 5' -59.5 NC_003387.1 + 3916 0.68 0.358386
Target:  5'- ---aCCGGCGggacgauggccGCCGCCGCGgcgaUCAGcGGCg -3'
miRNA:   3'- uagaGGUUGU-----------CGGCGGCGC----AGUC-CCG- -5'
12772 5' -59.5 NC_003387.1 + 14306 0.68 0.36684
Target:  5'- ---aCCAGC-GCCaGCCGC-UCGGGGUg -3'
miRNA:   3'- uagaGGUUGuCGG-CGGCGcAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 25129 0.67 0.374565
Target:  5'- cUCguaCCAGCGGCaCaCCGCGcagccgaUCGGGGCu -3'
miRNA:   3'- uAGa--GGUUGUCG-GcGGCGC-------AGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 34991 0.67 0.375431
Target:  5'- ---cCUGGCGGCCcgGCCGgGcCGGGGCg -3'
miRNA:   3'- uagaGGUUGUCGG--CGGCgCaGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 1069 0.67 0.375431
Target:  5'- aAUCgUUAGCGGCacuauuGCCaGUGUCAGGGCc -3'
miRNA:   3'- -UAGaGGUUGUCGg-----CGG-CGCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 50692 0.67 0.384156
Target:  5'- cUCggcgaCGGCGGCCGUCgGCGgcaccgagCAGGGCc -3'
miRNA:   3'- uAGag---GUUGUCGGCGG-CGCa-------GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 51417 0.66 0.47836
Target:  5'- cGUCgUCGAC-GUCGCC-CGcCAGGGCg -3'
miRNA:   3'- -UAGaGGUUGuCGGCGGcGCaGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.